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The map label for this gene is yodB [H]

Identifier: 116872591

GI number: 116872591

Start: 1181186

End: 1181509

Strand: Direct

Name: yodB [H]

Synonym: lwe1175

Alternate gene names: 116872591

Gene position: 1181186-1181509 (Clockwise)

Preceding gene: 116872590

Following gene: 116872592

Centisome position: 41.97

GC content: 41.98

Gene sequence:

>324_bases
ATGACTGATGCACATACAGTATGTCCAAAGTTTGAATCGGCGTTCCAATTACTAGGTAAACGCTGGACTGGACTTATCAT
CAATGTCTTACTGACTGGTCCAAAAAGGTTTAAACAAGTTGCCGCTGAGATCCCACAAATGAGTGATCGGGTGCTTGCAG
AGCGTTTGAAGGAACTTGAGGAAATGGATATCTGTTTAAGACAAGTTTATCCAGAAACTCCTGTACGCATTGAATATGAA
TTAACCGAAAAAGGGAAAGCACTCCAAGAAGTAATGCTTGAAGTCCAGTGCTGGGCGGATAAATGGGTGGAAGTACCTAA
TTGA

Upstream 100 bases:

>100_bases
TTCCATTTCCCCTTAACAACTTACTAAATATAAGCAACAAAAGATTTATTAGTTACTTTCTGATGATAGTTATGTTACAA
TAATGTCAGAGGTGAGAATT

Downstream 100 bases:

>100_bases
AAAGAAATAATCTCTCCTAATAATATGGAGAGATTATTTTTTAGCTTGAATCTTTCGCAGAACCATACTATAATAGAAAC
TATCTAAATAAGTAAAGACA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MTDAHTVCPKFESAFQLLGKRWTGLIINVLLTGPKRFKQVAAEIPQMSDRVLAERLKELEEMDICLRQVYPETPVRIEYE
LTEKGKALQEVMLEVQCWADKWVEVPN

Sequences:

>Translated_107_residues
MTDAHTVCPKFESAFQLLGKRWTGLIINVLLTGPKRFKQVAAEIPQMSDRVLAERLKELEEMDICLRQVYPETPVRIEYE
LTEKGKALQEVMLEVQCWADKWVEVPN
>Mature_106_residues
TDAHTVCPKFESAFQLLGKRWTGLIINVLLTGPKRFKQVAAEIPQMSDRVLAERLKELEEMDICLRQVYPETPVRIEYEL
TEKGKALQEVMLEVQCWADKWVEVPN

Specific function: Negatively regulates yodC and azoR1 which may contribute to the degradation of aromatic compounds. Probably positively regulates the catechol-specific transcription of mhqNOP, mhqED, and mhqA [H]

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12419; Mature: 12287

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDAHTVCPKFESAFQLLGKRWTGLIINVLLTGPKRFKQVAAEIPQMSDRVLAERLKELE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
EMDICLRQVYPETPVRIEYELTEKGKALQEVMLEVQCWADKWVEVPN
HHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TDAHTVCPKFESAFQLLGKRWTGLIINVLLTGPKRFKQVAAEIPQMSDRVLAERLKELE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
EMDICLRQVYPETPVRIEYELTEKGKALQEVMLEVQCWADKWVEVPN
HHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]