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The map label for this gene is rnfC [H]

Identifier: 116872516

GI number: 116872516

Start: 1117283

End: 1118647

Strand: Direct

Name: rnfC [H]

Synonym: lwe1100

Alternate gene names: 116872516

Gene position: 1117283-1118647 (Clockwise)

Preceding gene: 116872515

Following gene: 116872517

Centisome position: 39.7

GC content: 38.9

Gene sequence:

>1365_bases
CTGAGCCAAATGTCCATTTTAGAAAAAATTAAAGATGCTGGAGTTGTTGGTTGTGGTGGAGCGGGCTTTCCGACCCATGC
CAAATTTAGCGGTGAAGTGGAATATTTAATTATTAATGCGGCGGAATGTGAACCGCTCCTGAAAACAGATCATTTTGTGA
TGAGAAATCACGCAGTAGAAACAATTAAAGCAATTGAAATGGTTAAAAGCCAAGTAGGCGCAGAATTTGCGGTTATTGCA
ACGAAACGTTATTACACAGAAGAGATTGCGGCTCTTAGATTGGCAATTACAGAATTAAATGCAAGTGTGACTATTCATGA
GATGGATAATGTCTATCCGACTGGTGATGAGCAAGTCATGGTATTTGAAGTGACTGGTCGAGTTGTGCCACCAAGCGGGA
TTCCACTTATGGTTGGTTGTATTGTATCGAATGTCTCAACGATGTGGAATGTGTATCACGCGATTCAAGATGATGCGCCA
GTTGTTCGTAAACAATTAACGGTTACTGGTGCGGTTAATGAACCAAAACTTTTAGATGTACCAATTGGAACGCCATTTGA
AGTATGTTTAGCAGCAGCTGGTGGAACCAATTTGGACGAGTATTTATTTTTAGACGGTGGACCGATGATGGGAAAATTAA
ATGACCAATCGACCATTGCTGAAAAAGTTGTAACGAAAACTACGTCTGGCTTAATTGTTACAGAAGATACAGGCTATTTA
CACAAGCTCCATTATCAAACGGTGGAACAAATCTTTAATGAAACCAAATCGGCTTGTATTCAGTGTTCACTATGTTCAGA
TTTATGTCCGAGAAAACAATTAGGTCATGATATTCATCCACATAAGGTCATGCGTCATTTTGCTGTGGCGGAAGACATTA
CGGATATTAAACCAGACCCGATTTGGGAAGAAGCGATGATTTGTTGTGAATGTGGTATTTGTGAAGTTATTGCTTGTCCG
ATGGGTCTATCTCCAAGGCAAGTAAATATTCATGTAAAAAAAGAACTTTTAAAACAAGGGGTTCGTTATCAAACGGATAA
AAAAGAATTCACTCCAGATCCAATGCGCGAATATAAGTCTATTGCACCAAAAAATATTTTAATCAAAATGGGCTTACAGC
AATACGCAGATGTTCATTTAGAAACAATGCATTACTTAGATGTAGATGAAGTATTTATTCCAACCAAAATGCATATTGGA
GCGCCGTCCATTCCTGTTGTAAGCGAGGGAGATATCGTGAAAAAAGGGGATTTAATTGCGAAGGTTCCTGATACTGCTCT
TGGGGCAAATATCCATGCAAGTATTGATGGGCAAATTATCCGAATAACGGAAGAACAAGTTCATATTAAGAAGGTGATGT
CATGA

Upstream 100 bases:

>100_bases
TCTATTATATTGCTCTCTTTTAGGTTGCAAAATTTTACTATAGATTTTGGAATGTAAACGCTCTATCATTGAAGTATACT
GAAAAACTATTAAGAGGGTG

Downstream 100 bases:

>100_bases
AAATGGATACATTAGGATTTCTTGAATTAAACAGTATTTCAAAAGGCATCGAAGCAGTTGATACGATGTTAAAAGCGGCT
AATTCAGAATTAATTTATGC

Product: pduS type ferredoxin, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 453

Protein sequence:

>454_residues
MSQMSILEKIKDAGVVGCGGAGFPTHAKFSGEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIA
TKRYYTEEIAALRLAITELNASVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSGIPLMVGCIVSNVSTMWNVYHAIQDDAP
VVRKQLTVTGAVNEPKLLDVPIGTPFEVCLAAAGGTNLDEYLFLDGGPMMGKLNDQSTIAEKVVTKTTSGLIVTEDTGYL
HKLHYQTVEQIFNETKSACIQCSLCSDLCPRKQLGHDIHPHKVMRHFAVAEDITDIKPDPIWEEAMICCECGICEVIACP
MGLSPRQVNIHVKKELLKQGVRYQTDKKEFTPDPMREYKSIAPKNILIKMGLQQYADVHLETMHYLDVDEVFIPTKMHIG
APSIPVVSEGDIVKKGDLIAKVPDTALGANIHASIDGQIIRITEEQVHIKKVMS

Sequences:

>Translated_454_residues
MSQMSILEKIKDAGVVGCGGAGFPTHAKFSGEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIA
TKRYYTEEIAALRLAITELNASVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSGIPLMVGCIVSNVSTMWNVYHAIQDDAP
VVRKQLTVTGAVNEPKLLDVPIGTPFEVCLAAAGGTNLDEYLFLDGGPMMGKLNDQSTIAEKVVTKTTSGLIVTEDTGYL
HKLHYQTVEQIFNETKSACIQCSLCSDLCPRKQLGHDIHPHKVMRHFAVAEDITDIKPDPIWEEAMICCECGICEVIACP
MGLSPRQVNIHVKKELLKQGVRYQTDKKEFTPDPMREYKSIAPKNILIKMGLQQYADVHLETMHYLDVDEVFIPTKMHIG
APSIPVVSEGDIVKKGDLIAKVPDTALGANIHASIDGQIIRITEEQVHIKKVMS
>Mature_453_residues
SQMSILEKIKDAGVVGCGGAGFPTHAKFSGEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIAT
KRYYTEEIAALRLAITELNASVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSGIPLMVGCIVSNVSTMWNVYHAIQDDAPV
VRKQLTVTGAVNEPKLLDVPIGTPFEVCLAAAGGTNLDEYLFLDGGPMMGKLNDQSTIAEKVVTKTTSGLIVTEDTGYLH
KLHYQTVEQIFNETKSACIQCSLCSDLCPRKQLGHDIHPHKVMRHFAVAEDITDIKPDPIWEEAMICCECGICEVIACPM
GLSPRQVNIHVKKELLKQGVRYQTDKKEFTPDPMREYKSIAPKNILIKMGLQQYADVHLETMHYLDVDEVFIPTKMHIGA
PSIPVVSEGDIVKKGDLIAKVPDTALGANIHASIDGQIIRITEEQVHIKKVMS

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=328, Percent_Identity=28.9634146341463, Blast_Score=125, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 49993; Mature: 49861

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQMSILEKIKDAGVVGCGGAGFPTHAKFSGEVEYLIINAAECEPLLKTDHFVMRNHAVE
CCHHHHHHHHHHCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCHHHCCHHHHHHHHHH
TIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRLAITELNASVTIHEMDNVYPTGDEQVM
HHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCCEEE
VFEVTGRVVPPSGIPLMVGCIVSNVSTMWNVYHAIQDDAPVVRKQLTVTGAVNEPKLLDV
EEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEECCCCCEEEEE
PIGTPFEVCLAAAGGTNLDEYLFLDGGPMMGKLNDQSTIAEKVVTKTTSGLIVTEDTGYL
CCCCCHHHHEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCHH
HKLHYQTVEQIFNETKSACIQCSLCSDLCPRKQLGHDIHPHKVMRHFAVAEDITDIKPDP
HHHHHHHHHHHHHHHHHHEEEEHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
IWEEAMICCECGICEVIACPMGLSPRQVNIHVKKELLKQGVRYQTDKKEFTPDPMREYKS
CHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCCCHHHHHHH
IAPKNILIKMGLQQYADVHLETMHYLDVDEVFIPTKMHIGAPSIPVVSEGDIVKKGDLIA
CCCCCEEEECCHHHHHHHHHHHHEECCCCCEEECCEEECCCCCCCEECCCCEEECCCEEE
KVPDTALGANIHASIDGQIIRITEEQVHIKKVMS
ECCCHHHCCEEEEECCCEEEEEEHHHHHHHHHCC
>Mature Secondary Structure 
SQMSILEKIKDAGVVGCGGAGFPTHAKFSGEVEYLIINAAECEPLLKTDHFVMRNHAVE
CHHHHHHHHHHCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCHHHCCHHHHHHHHHH
TIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRLAITELNASVTIHEMDNVYPTGDEQVM
HHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCCEEE
VFEVTGRVVPPSGIPLMVGCIVSNVSTMWNVYHAIQDDAPVVRKQLTVTGAVNEPKLLDV
EEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEECCCCCEEEEE
PIGTPFEVCLAAAGGTNLDEYLFLDGGPMMGKLNDQSTIAEKVVTKTTSGLIVTEDTGYL
CCCCCHHHHEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCHH
HKLHYQTVEQIFNETKSACIQCSLCSDLCPRKQLGHDIHPHKVMRHFAVAEDITDIKPDP
HHHHHHHHHHHHHHHHHHEEEEHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
IWEEAMICCECGICEVIACPMGLSPRQVNIHVKKELLKQGVRYQTDKKEFTPDPMREYKS
CHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCCCHHHHHHH
IAPKNILIKMGLQQYADVHLETMHYLDVDEVFIPTKMHIGAPSIPVVSEGDIVKKGDLIA
CCCCCEEEECCHHHHHHHHHHHHEECCCCCEEECCEEECCCCCCCEECCCCEEECCCEEE
KVPDTALGANIHASIDGQIIRITEEQVHIKKVMS
ECCCHHHCCEEEEECCCEEEEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]