| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is 116872187
Identifier: 116872187
GI number: 116872187
Start: 795073
End: 797739
Strand: Direct
Name: 116872187
Synonym: lwe0767
Alternate gene names: NA
Gene position: 795073-797739 (Clockwise)
Preceding gene: 116872186
Following gene: 116872188
Centisome position: 28.25
GC content: 35.66
Gene sequence:
>2667_bases ATGAATAAGAAAAAACGACAAGCAATCTCGCTAGTGGGTGTACTCACAGTGATGATTGCTTTTTTTATTACCCCAATTAC GGCTCTTGCAGCTTCGGTGAATTATGAAAAAATTGGAGATTACGTCTCAACTTGGAATATTGCTTCACTAGGAGGATTAC ACTGGACAGATAACGGTGTGCACATGATTAAGGCAGATAATCAACCTGCTTTTTGTATTGAACACGGTGTTCTACTGAAT GGTGGCTCAGGGTTTGAACCCTCTGAGCTAAACAGTGCAGAAAAAGAACGGCTATCTTTGATCTCATATTACGGTTATCA AATTAGTCCTACAATGGAAAATTACGGAATCACTCAAAACATTATTTGGGAAGAGTTCGGTGATACATTGTTAACCACTC AACTTCCAAACTATACAAATCGCAAAAATGAAATTTTAGCGAAAGTAGCTAATTATAAAATTAAGCCCAGTTTTGCGAAT CAGAACATTACATTAAATCTTGGAGATTCTATCACACTGACAGATACAAACAATGTTTTATCAAAATATGGCAATCTTTT AGAAAATTCCGCAAATCTTCAAATTGAAAAAAATGGAAATATATTGAAATTAACTGCTACGGCTAGTTCTAAAGAGTCTG GTAAGCTTCAATATAGCATGGTGCCAAAAGATCAAGTGGGTCAAAGTTTCATCTATAAGAAACCTGGTGAACAGACTGTA GCCACATTTAAATTATCTAATGCTGGAGAAATGAATTTAGCGATCAAAGTGAATCTCAATGGAAATGTAAAATTGAAAAA AGTAGATGAAGATACTGGGCAAGCTGTTCCTAATACGAAAATGAAATTTGAGTACAACGGACAAATAAAAGAGATTGTCA CTGACACGAATGGTTTGGCGCAGATTGATGGAGTAAAAGCAGGCACGAAAGTAAAAATTACGGAGGTTACCGCTAGTAAT GGGTTTGTAAATAAAGGGGAATCAAAGGAGATCACGATTGAACCAAATAAAACAATTGAAGTGGTGTTTGGAAACAAAGC CCAACAAGGGTTATTAAAATTGAAAAAGACAGGTCAGAAAGCAATAGCTGTTACTACTACGGATTCTGATTATGGACAGC TACATGATATTACCTTTGATTATGTTCCTCTAGCCGATGTAACGTTTAATATTAAAGCTCGTGAAGACATTAAAGTAGGT GATTATGTTCATGCTAAAAAAGGAAGTGTTGTTGCGACTGTTAAAACAGATGCAAAAGGCGAACTAATCAATATGCCTAA GCTATATCTAGGTAAATATGAAGCTATTGAAACCAAGGCACCTGCTGGATATTTGATGAATACGACATCTCTGCCCTTTG AGTTTACCTATGAAGGGCAAAATGTGGAGTTGGTTTCTCAATCACTTGAAGCAAAGAATGATTTTCAACAACTAAAAATC ACTGTTCATAAAAATGAAGAACAGATTCAGGAGTGGAAGGAAAATGAGCCAGTATTAGAAGAAGTGAAAGCGAATGACAA AGTGTTTGGTTTATTTACGAACCAAGAATATGCAATGACTGACAACACCACTGTGCCAGCTGATGGTTTATTGGCATTTG GAACAGTTAAAGACGGTGAACTTGTTTTTCCTAACCTACAACTGATGGAAGGGAGATACTACATTCAAGAATTGGATGCT GGGGAGAGCCATAACATCGATACGACACATCATGAATTTGAGTTTACCGCAACGGATCATGAAACAGAAAAAGTCATTGA ACTTTATGCACCTAAAGAAAATCAAGAAGATGAATCGCTGCCGCTGTTAAATAAACTTCATTTTAATCATTTTTCATTAA AGAAAGTAAATGAAGAAGCTACGTTAGAAGAAAAAAATGGCTATGATTTTACCTTCACTGGAAATGGCAAGGATGCTATT TTTACTCTGGAAACGGAAGACAAAGAAGTAATTCAAACAGTCACAGTTGACAAGGATTCTTTGGCTATGTTCACGAATGT ACCTGTTGGAACGTTCTATTTGAAAGAAAAGCAACCATCTTCTGAGAGTTATGTACGTTCTTCTGAAACCTATAAAATTG TCTCTACACTAAAAGGCGTTCAAGCCTATGATAGTAAAGGGCAGCTTCTTGGTGAAGCAATGAATGAAGAAACAAGTGAA GAAGAGGAAGAAACTGAGCAGACCGAAGAATCAGATTCTAAAGAACCTATAAAAGATGAGCCAATCGTATTACTAGAAAT CAAAAACCATTTGGTTAAAGGCGTTGCAGAATTAACGAAAACAGATGTATTGAATGGGAAGGCTCTTCCAAATACTGGTA TTCGTATTCTTGATAAAGATAAAAAAGTAGTTATTGAAGGGAAAACAGATAACCAAGGTCAATTCACCTTTGAAAAATTA CCAAAAGGCACATACTATTTCCAAGAATTTGAAGCACCTATTGGTTATCAATTAGACGAAACACCGATTCAATTTGAAAT CAAAGAAGATGGCAAGGTAGTCAAAAGTACCATGACCAATCAACTTATTCCAAATGAAAAAGGAAATTTGCCACAAACAG GTGAAAAAACGTCCATTTTAGGAATCGCGCTAGGAAGTTTGTTACTGGTTGGTATTGCTATCTATTACTTTTACGCAAAG AAAAAACAAGGAAATAAAACAAAATAA
Upstream 100 bases:
>100_bases GGTAGAAAAATAGTCTTTTTAGGAGGGGAAAACATCGTTCAAATAAGAAATCCTACAATAGAATCAAATAAGTAAAAATT TCAAACAAAGGAGAAAACAA
Downstream 100 bases:
>100_bases AAATGAAAGAAGGAATCAACTATGTCAAATCGTGTCACAAGTATTGCCTTAAAGGAACAGCAGTTGGGTGCTAAAATCAA AGCTACGGTGAAAGAGGAAC
Product: cell wall-associated surface protein
Products: NA
Alternate protein names: Cell Wall-Associated Surface Protein; Cell Wall Surface Anchor Family Protein; Lpxtg-Motif Cell Wall Anchor Domain Protein; Cna B Domain-Containing Protein; Cna B Domain Protein; LPXTG-Motif Cell Wall Anchor Domain Protein; Secreted Cna B-Type Domain Protein; Cell Wall Surface Adhesion Protein; Cell Wall Anchor Protein; Surface Protein Gram-Positive Cocci
Number of amino acids: Translated: 888; Mature: 888
Protein sequence:
>888_residues MNKKKRQAISLVGVLTVMIAFFITPITALAASVNYEKIGDYVSTWNIASLGGLHWTDNGVHMIKADNQPAFCIEHGVLLN GGSGFEPSELNSAEKERLSLISYYGYQISPTMENYGITQNIIWEEFGDTLLTTQLPNYTNRKNEILAKVANYKIKPSFAN QNITLNLGDSITLTDTNNVLSKYGNLLENSANLQIEKNGNILKLTATASSKESGKLQYSMVPKDQVGQSFIYKKPGEQTV ATFKLSNAGEMNLAIKVNLNGNVKLKKVDEDTGQAVPNTKMKFEYNGQIKEIVTDTNGLAQIDGVKAGTKVKITEVTASN GFVNKGESKEITIEPNKTIEVVFGNKAQQGLLKLKKTGQKAIAVTTTDSDYGQLHDITFDYVPLADVTFNIKAREDIKVG DYVHAKKGSVVATVKTDAKGELINMPKLYLGKYEAIETKAPAGYLMNTTSLPFEFTYEGQNVELVSQSLEAKNDFQQLKI TVHKNEEQIQEWKENEPVLEEVKANDKVFGLFTNQEYAMTDNTTVPADGLLAFGTVKDGELVFPNLQLMEGRYYIQELDA GESHNIDTTHHEFEFTATDHETEKVIELYAPKENQEDESLPLLNKLHFNHFSLKKVNEEATLEEKNGYDFTFTGNGKDAI FTLETEDKEVIQTVTVDKDSLAMFTNVPVGTFYLKEKQPSSESYVRSSETYKIVSTLKGVQAYDSKGQLLGEAMNEETSE EEEETEQTEESDSKEPIKDEPIVLLEIKNHLVKGVAELTKTDVLNGKALPNTGIRILDKDKKVVIEGKTDNQGQFTFEKL PKGTYYFQEFEAPIGYQLDETPIQFEIKEDGKVVKSTMTNQLIPNEKGNLPQTGEKTSILGIALGSLLLVGIAIYYFYAK KKQGNKTK
Sequences:
>Translated_888_residues MNKKKRQAISLVGVLTVMIAFFITPITALAASVNYEKIGDYVSTWNIASLGGLHWTDNGVHMIKADNQPAFCIEHGVLLN GGSGFEPSELNSAEKERLSLISYYGYQISPTMENYGITQNIIWEEFGDTLLTTQLPNYTNRKNEILAKVANYKIKPSFAN QNITLNLGDSITLTDTNNVLSKYGNLLENSANLQIEKNGNILKLTATASSKESGKLQYSMVPKDQVGQSFIYKKPGEQTV ATFKLSNAGEMNLAIKVNLNGNVKLKKVDEDTGQAVPNTKMKFEYNGQIKEIVTDTNGLAQIDGVKAGTKVKITEVTASN GFVNKGESKEITIEPNKTIEVVFGNKAQQGLLKLKKTGQKAIAVTTTDSDYGQLHDITFDYVPLADVTFNIKAREDIKVG DYVHAKKGSVVATVKTDAKGELINMPKLYLGKYEAIETKAPAGYLMNTTSLPFEFTYEGQNVELVSQSLEAKNDFQQLKI TVHKNEEQIQEWKENEPVLEEVKANDKVFGLFTNQEYAMTDNTTVPADGLLAFGTVKDGELVFPNLQLMEGRYYIQELDA GESHNIDTTHHEFEFTATDHETEKVIELYAPKENQEDESLPLLNKLHFNHFSLKKVNEEATLEEKNGYDFTFTGNGKDAI FTLETEDKEVIQTVTVDKDSLAMFTNVPVGTFYLKEKQPSSESYVRSSETYKIVSTLKGVQAYDSKGQLLGEAMNEETSE EEEETEQTEESDSKEPIKDEPIVLLEIKNHLVKGVAELTKTDVLNGKALPNTGIRILDKDKKVVIEGKTDNQGQFTFEKL PKGTYYFQEFEAPIGYQLDETPIQFEIKEDGKVVKSTMTNQLIPNEKGNLPQTGEKTSILGIALGSLLLVGIAIYYFYAK KKQGNKTK >Mature_888_residues MNKKKRQAISLVGVLTVMIAFFITPITALAASVNYEKIGDYVSTWNIASLGGLHWTDNGVHMIKADNQPAFCIEHGVLLN GGSGFEPSELNSAEKERLSLISYYGYQISPTMENYGITQNIIWEEFGDTLLTTQLPNYTNRKNEILAKVANYKIKPSFAN QNITLNLGDSITLTDTNNVLSKYGNLLENSANLQIEKNGNILKLTATASSKESGKLQYSMVPKDQVGQSFIYKKPGEQTV ATFKLSNAGEMNLAIKVNLNGNVKLKKVDEDTGQAVPNTKMKFEYNGQIKEIVTDTNGLAQIDGVKAGTKVKITEVTASN GFVNKGESKEITIEPNKTIEVVFGNKAQQGLLKLKKTGQKAIAVTTTDSDYGQLHDITFDYVPLADVTFNIKAREDIKVG DYVHAKKGSVVATVKTDAKGELINMPKLYLGKYEAIETKAPAGYLMNTTSLPFEFTYEGQNVELVSQSLEAKNDFQQLKI TVHKNEEQIQEWKENEPVLEEVKANDKVFGLFTNQEYAMTDNTTVPADGLLAFGTVKDGELVFPNLQLMEGRYYIQELDA GESHNIDTTHHEFEFTATDHETEKVIELYAPKENQEDESLPLLNKLHFNHFSLKKVNEEATLEEKNGYDFTFTGNGKDAI FTLETEDKEVIQTVTVDKDSLAMFTNVPVGTFYLKEKQPSSESYVRSSETYKIVSTLKGVQAYDSKGQLLGEAMNEETSE EEEETEQTEESDSKEPIKDEPIVLLEIKNHLVKGVAELTKTDVLNGKALPNTGIRILDKDKKVVIEGKTDNQGQFTFEKL PKGTYYFQEFEAPIGYQLDETPIQFEIKEDGKVVKSTMTNQLIPNEKGNLPQTGEKTSILGIALGSLLLVGIAIYYFYAK KKQGNKTK
Specific function: Unknown
COG id: COG4932
COG function: function code M; Predicted outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98843; Mature: 98843
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: PS50847 GRAM_POS_ANCHORING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKKRQAISLVGVLTVMIAFFITPITALAASVNYEKIGDYVSTWNIASLGGLHWTDNGV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHCCCCHHCCCCEEECCCE HMIKADNQPAFCIEHGVLLNGGSGFEPSELNSAEKERLSLISYYGYQISPTMENYGITQN EEEEECCCCCEEEECCEEEECCCCCCCHHCCCHHHHHHHEEEECCEEECCCHHHCCCCHH IIWEEFGDTLLTTQLPNYTNRKNEILAKVANYKIKPSFANQNITLNLGDSITLTDTNNVL HHHHHHCCEEEEECCCCCCCCHHHHHHHHHCEEECCCCCCCEEEEEECCEEEEECCHHHH SKYGNLLENSANLQIEKNGNILKLTATASSKESGKLQYSMVPKDQVGQSFIYKKPGEQTV HHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCHHHCCCCEEECCCCCCEE ATFKLSNAGEMNLAIKVNLNGNVKLKKVDEDTGQAVPNTKMKFEYNGQIKEIVTDTNGLA EEEEECCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCE QIDGVKAGTKVKITEVTASNGFVNKGESKEITIEPNKTIEVVFGNKAQQGLLKLKKTGQK EECCCCCCCEEEEEEEECCCCCCCCCCCCEEEECCCCEEEEEECCCHHHHHHHHHHCCCE AIAVTTTDSDYGQLHDITFDYVPLADVTFNIKAREDIKVGDYVHAKKGSVVATVKTDAKG EEEEEECCCCCCEEEECEEEEEEECCEEEEEEECCCCCCCCEEEECCCCEEEEEECCCCC ELINMPKLYLGKYEAIETKAPAGYLMNTTSLPFEFTYEGQNVELVSQSLEAKNDFQQLKI CEECCCHHHHCCCCEECCCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEE TVHKNEEQIQEWKENEPVLEEVKANDKVFGLFTNQEYAMTDNTTVPADGLLAFGTVKDGE EEECCHHHHHHHHCCCCHHHHHCCCCEEEEEEECCEEEECCCCCCCCCCEEEEEEECCCC LVFPNLQLMEGRYYIQELDAGESHNIDTTHHEFEFTATDHETEKVIELYAPKENQEDESL EECCCCEEECCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCC PLLNKLHFNHFSLKKVNEEATLEEKNGYDFTFTGNGKDAIFTLETEDKEVIQTVTVDKDS CHHHHHCCCCEEEEECCCCCCEECCCCEEEEEECCCCEEEEEEECCCHHEEEEEEECCCC LAMFTNVPVGTFYLKEKQPSSESYVRSSETYKIVSTLKGVQAYDSKGQLLGEAMNEETSE EEEEECCCCEEEEEECCCCCCHHHHCCCCCEEHHHHHCCHHHCCCCHHHHHHHHCCCCCH EEEETEQTEESDSKEPIKDEPIVLLEIKNHLVKGVAELTKTDVLNGKALPNTGIRILDKD HHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC KKVVIEGKTDNQGQFTFEKLPKGTYYFQEFEAPIGYQLDETPIQFEIKEDGKVVKSTMTN CEEEEECCCCCCCCEEHHHCCCCCEEHEECCCCCCCCCCCCCEEEEECCCCHHHHHHHHH QLIPNEKGNLPQTGEKTSILGIALGSLLLVGIAIYYFYAKKKQGNKTK HCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHEEECCCCCCCC >Mature Secondary Structure MNKKKRQAISLVGVLTVMIAFFITPITALAASVNYEKIGDYVSTWNIASLGGLHWTDNGV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHCCCCHHCCCCEEECCCE HMIKADNQPAFCIEHGVLLNGGSGFEPSELNSAEKERLSLISYYGYQISPTMENYGITQN EEEEECCCCCEEEECCEEEECCCCCCCHHCCCHHHHHHHEEEECCEEECCCHHHCCCCHH IIWEEFGDTLLTTQLPNYTNRKNEILAKVANYKIKPSFANQNITLNLGDSITLTDTNNVL HHHHHHCCEEEEECCCCCCCCHHHHHHHHHCEEECCCCCCCEEEEEECCEEEEECCHHHH SKYGNLLENSANLQIEKNGNILKLTATASSKESGKLQYSMVPKDQVGQSFIYKKPGEQTV HHHHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCHHHCCCCEEECCCCCCEE ATFKLSNAGEMNLAIKVNLNGNVKLKKVDEDTGQAVPNTKMKFEYNGQIKEIVTDTNGLA EEEEECCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCE QIDGVKAGTKVKITEVTASNGFVNKGESKEITIEPNKTIEVVFGNKAQQGLLKLKKTGQK EECCCCCCCEEEEEEEECCCCCCCCCCCCEEEECCCCEEEEEECCCHHHHHHHHHHCCCE AIAVTTTDSDYGQLHDITFDYVPLADVTFNIKAREDIKVGDYVHAKKGSVVATVKTDAKG EEEEEECCCCCCEEEECEEEEEEECCEEEEEEECCCCCCCCEEEECCCCEEEEEECCCCC ELINMPKLYLGKYEAIETKAPAGYLMNTTSLPFEFTYEGQNVELVSQSLEAKNDFQQLKI CEECCCHHHHCCCCEECCCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEE TVHKNEEQIQEWKENEPVLEEVKANDKVFGLFTNQEYAMTDNTTVPADGLLAFGTVKDGE EEECCHHHHHHHHCCCCHHHHHCCCCEEEEEEECCEEEECCCCCCCCCCEEEEEEECCCC LVFPNLQLMEGRYYIQELDAGESHNIDTTHHEFEFTATDHETEKVIELYAPKENQEDESL EECCCCEEECCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCC PLLNKLHFNHFSLKKVNEEATLEEKNGYDFTFTGNGKDAIFTLETEDKEVIQTVTVDKDS CHHHHHCCCCEEEEECCCCCCEECCCCEEEEEECCCCEEEEEEECCCHHEEEEEEECCCC LAMFTNVPVGTFYLKEKQPSSESYVRSSETYKIVSTLKGVQAYDSKGQLLGEAMNEETSE EEEEECCCCEEEEEECCCCCCHHHHCCCCCEEHHHHHCCHHHCCCCHHHHHHHHCCCCCH EEEETEQTEESDSKEPIKDEPIVLLEIKNHLVKGVAELTKTDVLNGKALPNTGIRILDKD HHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC KKVVIEGKTDNQGQFTFEKLPKGTYYFQEFEAPIGYQLDETPIQFEIKEDGKVVKSTMTN CEEEEECCCCCCCCEEHHHCCCCCEEHEECCCCCCCCCCCCCEEEEECCCCHHHHHHHHH QLIPNEKGNLPQTGEKTSILGIALGSLLLVGIAIYYFYAKKKQGNKTK HCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA