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The map label for this gene is ynbA [H]

Identifier: 116872143

GI number: 116872143

Start: 746692

End: 747948

Strand: Direct

Name: ynbA [H]

Synonym: lwe0723

Alternate gene names: 116872143

Gene position: 746692-747948 (Clockwise)

Preceding gene: 116872142

Following gene: 116872144

Centisome position: 26.53

GC content: 38.58

Gene sequence:

>1257_bases
ATGGAGAAAAAAGTATTAATCGTTGGTATCAGCCAAAAACAAAAAGATTTTGATTATTCAATGGAAGAATTAGCCAATTT
AGCGGCTGCAAACAATATGGAAGTAGTGGGCGAAATACGTCAAAACATCGACCGTGAAAACCGCGCTACCTATGTTGGAA
AAGGAAAAGTGGATGAAATCAAGGGTCTAGCAGAAATGCAGGATGCTCGCTTGATTATTTTTAATGACGAGCTTTCCCCT
TCGCAAATTAGGAATTTAGAAGAAGCGCTTGAACTGGATGTTATGGACAGAACAGGTCTTATTCTAGCTATATTCGCAAA
TCGAGCAAAAACTAAAGAAGCACAACTTCAAGTCCAAATTGCTAAACTACAATATGAATTACCACGGATTTTCGGACAAG
GCGAAGACATGGACCAACAAAGCGGGAAAGGCGGGCTCAGTAACCGTGGTTCTGGTGAAAAGAAAATCGAAACAGATCGC
CGAACCATTAAACATCAAATACGCCATTTGCAAAAAGAGTTAGATATGCTCGTTGATGACCGTGAAGTACGTCGCCGAAA
ACGAAAGAAAAATGAGATTCCTGTTGTGTCGCTTGTTGGCTATACGAATGCTGGAAAATCAACCACGATGAATGGTTTAG
TACGCGCCTATAGCGAAACTGCTGAAAAACAAGTTTTTGAGAAAGATATGCTTTTTGCCACACTTGAAACGAGCGTGCGC
GAAATTGTTTTACCAGACAACAAGCAATTTTTACTAACAGATACAGTCGGTTTTGTTAGCAAACTTCCGCATCAATTAGT
GAAAGCATTCCGTTCCACACTAGAAGAGGCGCGCGATGCGGATTTACTCATTCATGTGGTAGATTATTCCGATCCACATT
ATAAAACGATGATGAAGACTACAGAAGAAACACTCAAAGCAGTTGGTGTGGAAGATGTTCCAGTTATTTATGCATATAAT
AAAGCAGATCTTCTAGAAAATGAAATTTACCCTAAACAAACGGATAATACGATTGTTTTTTCAGCACGGGATGAAAAAAG
TTTAGAATTTCTAACAGAAGTGATTCGTAAAGAATTATTCGCTAGTCATGAAAAAGCAACTTTTTTAATTCCTTTTGAAG
CAGGGAAAGTGGTTGCTTATTTAAACGAACATGCGGATGTGTTAGAAACCGAATACTTGGAAAATGGCACACAAATTGTG
GCTGAAGTTAGTCCAGCTGATTTACAAAAACTAGCAGCATATCAAGTAGCTGAATAA

Upstream 100 bases:

>100_bases
TCATTTGAAAGCAAGCTAGTATCTATTTGATGCTATTTTTGCGTTTTCATCTACTCAGAAACCCTGACCGCGCTGAATCT
ATTTCAGGAGGTCCTTTTTT

Downstream 100 bases:

>100_bases
AGCGAGTTCCAGCTGAATTTGCTATAATGACATGTAGAGCAAATTTAGTGAGGAGAATTCTATCTATGAAAAAAACTGGA
TGGGGGATACTTGGCGCAGT

Product: GTP-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MEKKVLIVGISQKQKDFDYSMEELANLAAANNMEVVGEIRQNIDRENRATYVGKGKVDEIKGLAEMQDARLIIFNDELSP
SQIRNLEEALELDVMDRTGLILAIFANRAKTKEAQLQVQIAKLQYELPRIFGQGEDMDQQSGKGGLSNRGSGEKKIETDR
RTIKHQIRHLQKELDMLVDDREVRRRKRKKNEIPVVSLVGYTNAGKSTTMNGLVRAYSETAEKQVFEKDMLFATLETSVR
EIVLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEEARDADLLIHVVDYSDPHYKTMMKTTEETLKAVGVEDVPVIYAYN
KADLLENEIYPKQTDNTIVFSARDEKSLEFLTEVIRKELFASHEKATFLIPFEAGKVVAYLNEHADVLETEYLENGTQIV
AEVSPADLQKLAAYQVAE

Sequences:

>Translated_418_residues
MEKKVLIVGISQKQKDFDYSMEELANLAAANNMEVVGEIRQNIDRENRATYVGKGKVDEIKGLAEMQDARLIIFNDELSP
SQIRNLEEALELDVMDRTGLILAIFANRAKTKEAQLQVQIAKLQYELPRIFGQGEDMDQQSGKGGLSNRGSGEKKIETDR
RTIKHQIRHLQKELDMLVDDREVRRRKRKKNEIPVVSLVGYTNAGKSTTMNGLVRAYSETAEKQVFEKDMLFATLETSVR
EIVLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEEARDADLLIHVVDYSDPHYKTMMKTTEETLKAVGVEDVPVIYAYN
KADLLENEIYPKQTDNTIVFSARDEKSLEFLTEVIRKELFASHEKATFLIPFEAGKVVAYLNEHADVLETEYLENGTQIV
AEVSPADLQKLAAYQVAE
>Mature_418_residues
MEKKVLIVGISQKQKDFDYSMEELANLAAANNMEVVGEIRQNIDRENRATYVGKGKVDEIKGLAEMQDARLIIFNDELSP
SQIRNLEEALELDVMDRTGLILAIFANRAKTKEAQLQVQIAKLQYELPRIFGQGEDMDQQSGKGGLSNRGSGEKKIETDR
RTIKHQIRHLQKELDMLVDDREVRRRKRKKNEIPVVSLVGYTNAGKSTTMNGLVRAYSETAEKQVFEKDMLFATLETSVR
EIVLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEEARDADLLIHVVDYSDPHYKTMMKTTEETLKAVGVEDVPVIYAYN
KADLLENEIYPKQTDNTIVFSARDEKSLEFLTEVIRKELFASHEKATFLIPFEAGKVVAYLNEHADVLETEYLENGTQIV
AEVSPADLQKLAAYQVAE

Specific function: Unknown

COG id: COG2262

COG function: function code R; GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI310124269, Length=222, Percent_Identity=33.7837837837838, Blast_Score=119, Evalue=7e-27,
Organism=Homo sapiens, GI310124267, Length=222, Percent_Identity=33.7837837837838, Blast_Score=119, Evalue=7e-27,
Organism=Homo sapiens, GI310124171, Length=222, Percent_Identity=33.7837837837838, Blast_Score=119, Evalue=7e-27,
Organism=Homo sapiens, GI310124169, Length=222, Percent_Identity=33.7837837837838, Blast_Score=119, Evalue=7e-27,
Organism=Homo sapiens, GI310133116, Length=230, Percent_Identity=33.0434782608696, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI310133118, Length=230, Percent_Identity=33.0434782608696, Blast_Score=115, Evalue=1e-25,
Organism=Escherichia coli, GI1790615, Length=408, Percent_Identity=33.8235294117647, Blast_Score=225, Evalue=3e-60,
Organism=Caenorhabditis elegans, GI17561038, Length=338, Percent_Identity=30.1775147928994, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24650079, Length=390, Percent_Identity=31.5384615384615, Blast_Score=149, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016496
- InterPro:   IPR006073
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 47449; Mature: 47449

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKVLIVGISQKQKDFDYSMEELANLAAANNMEVVGEIRQNIDRENRATYVGKGKVDEI
CCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCCHHHH
KGLAEMQDARLIIFNDELSPSQIRNLEEALELDVMDRTGLILAIFANRAKTKEAQLQVQI
HHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHEEHH
AKLQYELPRIFGQGEDMDQQSGKGGLSNRGSGEKKIETDRRTIKHQIRHLQKELDMLVDD
HHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
REVRRRKRKKNEIPVVSLVGYTNAGKSTTMNGLVRAYSETAEKQVFEKDMLFATLETSVR
HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIVLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEEARDADLLIHVVDYSDPHYKTMMKT
EEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
TEETLKAVGVEDVPVIYAYNKADLLENEIYPKQTDNTIVFSARDEKSLEFLTEVIRKELF
HHHHHHHCCCCCCCEEEEECHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHH
ASHEKATFLIPFEAGKVVAYLNEHADVLETEYLENGTQIVAEVSPADLQKLAAYQVAE
HCCCCEEEEEEECCCCEEEEHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCC
>Mature Secondary Structure
MEKKVLIVGISQKQKDFDYSMEELANLAAANNMEVVGEIRQNIDRENRATYVGKGKVDEI
CCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCCHHHH
KGLAEMQDARLIIFNDELSPSQIRNLEEALELDVMDRTGLILAIFANRAKTKEAQLQVQI
HHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHEEHH
AKLQYELPRIFGQGEDMDQQSGKGGLSNRGSGEKKIETDRRTIKHQIRHLQKELDMLVDD
HHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
REVRRRKRKKNEIPVVSLVGYTNAGKSTTMNGLVRAYSETAEKQVFEKDMLFATLETSVR
HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIVLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEEARDADLLIHVVDYSDPHYKTMMKT
EEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
TEETLKAVGVEDVPVIYAYNKADLLENEIYPKQTDNTIVFSARDEKSLEFLTEVIRKELF
HHHHHHHCCCCCCCEEEEECHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHH
ASHEKATFLIPFEAGKVVAYLNEHADVLETEYLENGTQIVAEVSPADLQKLAAYQVAE
HCCCCEEEEEEECCCCEEEEHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]