| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is yhcI [H]
Identifier: 116872138
GI number: 116872138
Start: 742166
End: 743146
Strand: Direct
Name: yhcI [H]
Synonym: lwe0718
Alternate gene names: 116872138
Gene position: 742166-743146 (Clockwise)
Preceding gene: 116872137
Following gene: 116872139
Centisome position: 26.37
GC content: 39.86
Gene sequence:
>981_bases TTGATTAATTTAGTATATAATGAACAATTAAAACTTTGGCGGAAAAAACGGCTCATCGTTATATTAGCTTTGGTTGCCAT TATTGTAGGAATTTTTACGTATGCGCAGTTTAGACAATATCAGGAAGATGAGAAGCAAGCGGGGACAAGCGATTGGCATG TGCAAACCCAGCAACAAATCGTCGACCTTGAAAACAGACTCGGAACAGGGAGATTACCAGAAGAATATCAAAAATATTTC AAAGTACTGGTTGGGCAACTGCAATATTATTTAGACAATGACATCAATCCAAACGCACCAGGAGCTCCAACTTTCTTAAA AACATTTGTGGAAAATGGTATTAGTTTGTTGTTTCCGCTCTTTATCATGGTCATTGCGGCCGATTTGATTTCTGCTGAAA CAAGTGCAGGAACAATGAAATTCTTACTGACAAGACCTGTGAAACGATGGCGGATTTTGACGAGTAAATATATATCGATG TTGCTTTCGATTTCCGCGATTACGGTTTTATCAGCTGTTATTGCCTATCTGATTTCTGGTATTATCTTTGGTTACGGAGG TTGGGATGCACCTGTTCTCACCGGATTTGGTGTGAAAGATGGTGCGATAACCACAACAGACGTATACCAGTTACCTGTGT GGCAACTACTTCTCATGGAATTTGGACTCGCTTGGTTTGTAAGTGTCGTGGTCGGAGTGTTAACCATGTTTGTATCCGTG CTAGTTCGTTCCACAGCTGCCGTAATGGGAATTATGCTAGCTTCACTTATTACCGGAACCATACTCACCAATCTCGTCAG CTCTTGGCCAAGTGCGAAATATCTATTTATGGTCAATTTACAACTGACAAATTATTTAAACGGCTCCAGTCCACCAGTTG AAGGAATGACATTAAGTTTCTCGATGCTCGTCTTAACTGCTTGGATGTTAGTCGCTTTCGTCTTATCCTATTTTATTTTT ACAAAACGAGATGTGTATTAA
Upstream 100 bases:
>100_bases AATGAAAAGCTTGTTTCAAAAGGTATCCAAGTTCACGAAATCGATAAGAAAAAACCATCTCTCGAAGACCTATTTCTTGA GTTAACAGGAGGTCATTCGA
Downstream 100 bases:
>100_bases AGAGCGCTTATTGGCGCTCTTTTTTGCGTCCGTTAAAAGTTACTTACTTTTTGTGAGCAAAAAACTTTTCTTTTCTACAG TTTAGTTATAAACTATAGTT
Product: ABC transporter permease protein, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 326; Mature: 326
Protein sequence:
>326_residues MINLVYNEQLKLWRKKRLIVILALVAIIVGIFTYAQFRQYQEDEKQAGTSDWHVQTQQQIVDLENRLGTGRLPEEYQKYF KVLVGQLQYYLDNDINPNAPGAPTFLKTFVENGISLLFPLFIMVIAADLISAETSAGTMKFLLTRPVKRWRILTSKYISM LLSISAITVLSAVIAYLISGIIFGYGGWDAPVLTGFGVKDGAITTTDVYQLPVWQLLLMEFGLAWFVSVVVGVLTMFVSV LVRSTAAVMGIMLASLITGTILTNLVSSWPSAKYLFMVNLQLTNYLNGSSPPVEGMTLSFSMLVLTAWMLVAFVLSYFIF TKRDVY
Sequences:
>Translated_326_residues MINLVYNEQLKLWRKKRLIVILALVAIIVGIFTYAQFRQYQEDEKQAGTSDWHVQTQQQIVDLENRLGTGRLPEEYQKYF KVLVGQLQYYLDNDINPNAPGAPTFLKTFVENGISLLFPLFIMVIAADLISAETSAGTMKFLLTRPVKRWRILTSKYISM LLSISAITVLSAVIAYLISGIIFGYGGWDAPVLTGFGVKDGAITTTDVYQLPVWQLLLMEFGLAWFVSVVVGVLTMFVSV LVRSTAAVMGIMLASLITGTILTNLVSSWPSAKYLFMVNLQLTNYLNGSSPPVEGMTLSFSMLVLTAWMLVAFVLSYFIF TKRDVY >Mature_326_residues MINLVYNEQLKLWRKKRLIVILALVAIIVGIFTYAQFRQYQEDEKQAGTSDWHVQTQQQIVDLENRLGTGRLPEEYQKYF KVLVGQLQYYLDNDINPNAPGAPTFLKTFVENGISLLFPLFIMVIAADLISAETSAGTMKFLLTRPVKRWRILTSKYISM LLSISAITVLSAVIAYLISGIIFGYGGWDAPVLTGFGVKDGAITTTDVYQLPVWQLLLMEFGLAWFVSVVVGVLTMFVSV LVRSTAAVMGIMLASLITGTILTNLVSSWPSAKYLFMVNLQLTNYLNGSSPPVEGMTLSFSMLVLTAWMLVAFVLSYFIF TKRDVY
Specific function: Unknown
COG id: COG1277
COG function: function code R; ABC-type transport system involved in multi-copper enzyme maturation, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36529; Mature: 36529
Theoretical pI: Translated: 9.24; Mature: 9.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINLVYNEQLKLWRKKRLIVILALVAIIVGIFTYAQFRQYQEDEKQAGTSDWHVQTQQQI CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH VDLENRLGTGRLPEEYQKYFKVLVGQLQYYLDNDINPNAPGAPTFLKTFVENGISLLFPL HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHH FIMVIAADLISAETSAGTMKFLLTRPVKRWRILTSKYISMLLSISAITVLSAVIAYLISG HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IIFGYGGWDAPVLTGFGVKDGAITTTDVYQLPVWQLLLMEFGLAWFVSVVVGVLTMFVSV HHHCCCCCCCCHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVRSTAAVMGIMLASLITGTILTNLVSSWPSAKYLFMVNLQLTNYLNGSSPPVEGMTLSF HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHCCCCCCCCCCCHHHHH SMLVLTAWMLVAFVLSYFIFTKRDVY HHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MINLVYNEQLKLWRKKRLIVILALVAIIVGIFTYAQFRQYQEDEKQAGTSDWHVQTQQQI CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH VDLENRLGTGRLPEEYQKYFKVLVGQLQYYLDNDINPNAPGAPTFLKTFVENGISLLFPL HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHH FIMVIAADLISAETSAGTMKFLLTRPVKRWRILTSKYISMLLSISAITVLSAVIAYLISG HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IIFGYGGWDAPVLTGFGVKDGAITTTDVYQLPVWQLLLMEFGLAWFVSVVVGVLTMFVSV HHHCCCCCCCCHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVRSTAAVMGIMLASLITGTILTNLVSSWPSAKYLFMVNLQLTNYLNGSSPPVEGMTLSF HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHCCCCCCCCCCCHHHHH SMLVLTAWMLVAFVLSYFIFTKRDVY HHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8969498; 9384377 [H]