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The map label for this gene is ygdD [C]

Identifier: 116872054

GI number: 116872054

Start: 668004

End: 668378

Strand: Direct

Name: ygdD [C]

Synonym: lwe0634

Alternate gene names: 116872054

Gene position: 668004-668378 (Clockwise)

Preceding gene: 116872053

Following gene: 116872055

Centisome position: 23.74

GC content: 40.27

Gene sequence:

>375_bases
ATGAAGAAAACTATTATTACTGGTGCCGTTTTTGCGGGGCTAGCAGTTTTACTTGGCGCGTTTGGTGCACATGCTTTAAA
AGATGTACTTGGACGTTATGCGAGCACTTGGGAAACAGGGGTACAGTATCAAATGTTTCACGCGGTGGGCATTTTGATCA
TTGGATTATTAATGGAAAAACAAACTAGTCGACTTTACAACTGGGCAGCGATTTTATTTTCAGTCGGAATTGTGTTTTTC
TCTGGTAGTTTGTATGTATTAAGTATTTCCAAAGTGACCGTTTTAGGCGCGATTACGCCTATTGGTGGCGTTTGTTTTGT
CGTCGGTTGGTTCTTGCTAATATTAGGAGTATCTAAAAGAACGATGAGCAAATAG

Upstream 100 bases:

>100_bases
AACATCTGAACCAGCTCAAATCGCAAGTATGGATGGTAAAAAAATAGAATTAGAAGACGGAGCAAATGGAGACTCATTGC
TTGATTTTTAGGGGGTAACC

Downstream 100 bases:

>100_bases
ATTCAAAAAATAATCGTCTTTTTGCGCTCATTTAAGTGGAAAGACGATTATTTTTTCTTATTGGTAAATAAGTGCTAAAA
TAAAGGAATCATAATTTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MKKTIITGAVFAGLAVLLGAFGAHALKDVLGRYASTWETGVQYQMFHAVGILIIGLLMEKQTSRLYNWAAILFSVGIVFF
SGSLYVLSISKVTVLGAITPIGGVCFVVGWFLLILGVSKRTMSK

Sequences:

>Translated_124_residues
MKKTIITGAVFAGLAVLLGAFGAHALKDVLGRYASTWETGVQYQMFHAVGILIIGLLMEKQTSRLYNWAAILFSVGIVFF
SGSLYVLSISKVTVLGAITPIGGVCFVVGWFLLILGVSKRTMSK
>Mature_124_residues
MKKTIITGAVFAGLAVLLGAFGAHALKDVLGRYASTWETGVQYQMFHAVGILIIGLLMEKQTSRLYNWAAILFSVGIVFF
SGSLYVLSISKVTVLGAITPIGGVCFVVGWFLLILGVSKRTMSK

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=112, Percent_Identity=40.1785714285714, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 13317; Mature: 13317

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTIITGAVFAGLAVLLGAFGAHALKDVLGRYASTWETGVQYQMFHAVGILIIGLLMEK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
QTSRLYNWAAILFSVGIVFFSGSLYVLSISKVTVLGAITPIGGVCFVVGWFLLILGVSKR
HHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHH
TMSK
HCCC
>Mature Secondary Structure
MKKTIITGAVFAGLAVLLGAFGAHALKDVLGRYASTWETGVQYQMFHAVGILIIGLLMEK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
QTSRLYNWAAILFSVGIVFFSGSLYVLSISKVTVLGAITPIGGVCFVVGWFLLILGVSKR
HHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHH
TMSK
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA