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The map label for this gene is yhdW [H]

Identifier: 116872006

GI number: 116872006

Start: 623765

End: 625516

Strand: Direct

Name: yhdW [H]

Synonym: lwe0586

Alternate gene names: 116872006

Gene position: 623765-625516 (Clockwise)

Preceding gene: 116872004

Following gene: 116872009

Centisome position: 22.17

GC content: 33.73

Gene sequence:

>1752_bases
ATGAGTGATTTAAAAGAAAGTTTAAAAGTTATGTATCAATTTAAGACAGATTATCTTAAAGTAACCTTATTGTTAACAAT
TTTGCAGGCATTTGTGATTGGGCCGTTTATTTATTATTTCTTTTTCTTTATTCTCCGGGTTATCGGAGTGCCAGGTATTA
CAGATGCCAATCTAGGCGAGATTATTTCGAGTCCTGTTGCCGTTATTATGCTGCTTATTTTAGCTTTACTCATTCTAATG
TTTGTTTATTATGAACTGGGTTTCTTTATAATGATGGCGATTTATCAATTGCGAGGAGAAAGCTATACCGTTTTCAAAAT
CATTCAGAGGCTCAATGTAAAAGCAAAATATTTTCTTAGTTATCAAGCGGTTTATTTTTTGTTATATTTCTTTTTGCTTT
TACCGATTGCTGGATTATCTTTACCAATTACGATAACAGAAAATCTCTATTTGCCTCATTTTATTACAGATGAATTAATG
AAAACGTCGACAGGGACGTGGCTTTATGTTATTGCAATGGCGATTATTTTCTATATTAGTGCTAGACTTGTGTTCGCTCT
GCCGTATTTCATTGAAGATAAGTCAATAAAAATAAACGGAGCTATCCGGAAAAGTTGGAATTACCCGAAAAAACGCTTGT
TTTTCATGTTGCTAAAATGGATTTTACTTATTGTGGTGATGGGCTTTTTAGTATCTATTATCGCGACGATTATAATGCTG
CCTCTTCTCTTGATAGAAAAAATAAATCCGGGAATTGCGGTGGTTATAGCTGGCATTACTTTAACTATATTACAAGTGAT
AGGTTTCTTTGTTGCTGGGGTTTTCCAAGGGATTATTGCGCAATTATTAGTGAGAAATGCCTTTACTATAGAGGCACAAA
CGACTTCTGTTTCACGCAGTCAGTTCCCTCATAAAAAACGATTTATTGTTGGCGGAATAATCATTTTCATTATTTTTAGC
AGTTTTAATGTTTATGCAGTTAATGCAACTTTGTATGAACCAAACACGAAAATAATTGCTCATCGTGGTGATACAGTGAA
TGCTGTTGAGAATACGGTAGAAGCTATTGAGTCTGCTGCAAAAGCTGGGGCCGATTACAGCGAAATTGATATTCAAGAAA
CCAAAGATCATCAATTTGTTGTTTTCCATGACATGACACTGAGAAGACTTGCTGGAAGTTCTAAGCGAGTAGCAGATATG
ACATTACAAGAGTTACAGCAAACTAAGATAACTAGTGGTGCCTACTCATCTCATATAGCTTCTTTCGATGAAATTATCAA
TGCTGCAAAAAAGAATAAGATAGATTTACTAGTTGAGGTGAAACTGCACGGAGGGGAATCAAGCGATATGGTAGAACAAT
TTATTACATTATTAAAGAAAGAAAAAGTAGCGGATAAGTATCTAGTCCAATCATTGAATCAGCCTGTTATCGAGAAAATA
GAACATGCCGACCCTTCGCTTGAAACTGGCATTATTTTAGCGCTCAATATCGGGAACTTACCAAAAACATCTGCTGATTT
TATTGTTTTAGAAGATTTTTCTATTAATAAACGAATACTTACACAAGCCAAGCAAAATAACAAAAAGGTGTTCGTTTGGA
CAGTAAATAAAGAAAAATTAATGCAAATGTATTTACGGAAAAATATAGATGGAATCATCACCAATTATCCTAAAAAAGCG
ATAGAACTTAGGGATTCATTTAATAAAAATGATTCTTTGCGTAGTCGTATTGAGAATAGATTAGGTTTTTAA

Upstream 100 bases:

>100_bases
ACCTCTTTCAAATAGTTAACTTTATGAATTAATTATACCTGAATTTACTTCTTTGTTAAACAATAAAGCCTTGAAAAACG
AACAAAAAAGGGAGAAGTAA

Downstream 100 bases:

>100_bases
ATAGAAAAATCCGCAAACAATGACTGTTTGCGGAAGTTTTTTATTTTAATTCAAATGATTTTTTAACAGAATTTTTGCTG
AAACTGATTAATTCTTTTGC

Product: glycerophosphoryl diester phosphodiesterase family protein

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 583; Mature: 582

Protein sequence:

>583_residues
MSDLKESLKVMYQFKTDYLKVTLLLTILQAFVIGPFIYYFFFFILRVIGVPGITDANLGEIISSPVAVIMLLILALLILM
FVYYELGFFIMMAIYQLRGESYTVFKIIQRLNVKAKYFLSYQAVYFLLYFFLLLPIAGLSLPITITENLYLPHFITDELM
KTSTGTWLYVIAMAIIFYISARLVFALPYFIEDKSIKINGAIRKSWNYPKKRLFFMLLKWILLIVVMGFLVSIIATIIML
PLLLIEKINPGIAVVIAGITLTILQVIGFFVAGVFQGIIAQLLVRNAFTIEAQTTSVSRSQFPHKKRFIVGGIIIFIIFS
SFNVYAVNATLYEPNTKIIAHRGDTVNAVENTVEAIESAAKAGADYSEIDIQETKDHQFVVFHDMTLRRLAGSSKRVADM
TLQELQQTKITSGAYSSHIASFDEIINAAKKNKIDLLVEVKLHGGESSDMVEQFITLLKKEKVADKYLVQSLNQPVIEKI
EHADPSLETGIILALNIGNLPKTSADFIVLEDFSINKRILTQAKQNNKKVFVWTVNKEKLMQMYLRKNIDGIITNYPKKA
IELRDSFNKNDSLRSRIENRLGF

Sequences:

>Translated_583_residues
MSDLKESLKVMYQFKTDYLKVTLLLTILQAFVIGPFIYYFFFFILRVIGVPGITDANLGEIISSPVAVIMLLILALLILM
FVYYELGFFIMMAIYQLRGESYTVFKIIQRLNVKAKYFLSYQAVYFLLYFFLLLPIAGLSLPITITENLYLPHFITDELM
KTSTGTWLYVIAMAIIFYISARLVFALPYFIEDKSIKINGAIRKSWNYPKKRLFFMLLKWILLIVVMGFLVSIIATIIML
PLLLIEKINPGIAVVIAGITLTILQVIGFFVAGVFQGIIAQLLVRNAFTIEAQTTSVSRSQFPHKKRFIVGGIIIFIIFS
SFNVYAVNATLYEPNTKIIAHRGDTVNAVENTVEAIESAAKAGADYSEIDIQETKDHQFVVFHDMTLRRLAGSSKRVADM
TLQELQQTKITSGAYSSHIASFDEIINAAKKNKIDLLVEVKLHGGESSDMVEQFITLLKKEKVADKYLVQSLNQPVIEKI
EHADPSLETGIILALNIGNLPKTSADFIVLEDFSINKRILTQAKQNNKKVFVWTVNKEKLMQMYLRKNIDGIITNYPKKA
IELRDSFNKNDSLRSRIENRLGF
>Mature_582_residues
SDLKESLKVMYQFKTDYLKVTLLLTILQAFVIGPFIYYFFFFILRVIGVPGITDANLGEIISSPVAVIMLLILALLILMF
VYYELGFFIMMAIYQLRGESYTVFKIIQRLNVKAKYFLSYQAVYFLLYFFLLLPIAGLSLPITITENLYLPHFITDELMK
TSTGTWLYVIAMAIIFYISARLVFALPYFIEDKSIKINGAIRKSWNYPKKRLFFMLLKWILLIVVMGFLVSIIATIIMLP
LLLIEKINPGIAVVIAGITLTILQVIGFFVAGVFQGIIAQLLVRNAFTIEAQTTSVSRSQFPHKKRFIVGGIIIFIIFSS
FNVYAVNATLYEPNTKIIAHRGDTVNAVENTVEAIESAAKAGADYSEIDIQETKDHQFVVFHDMTLRRLAGSSKRVADMT
LQELQQTKITSGAYSSHIASFDEIINAAKKNKIDLLVEVKLHGGESSDMVEQFITLLKKEKVADKYLVQSLNQPVIEKIE
HADPSLETGIILALNIGNLPKTSADFIVLEDFSINKRILTQAKQNNKKVFVWTVNKEKLMQMYLRKNIDGIITNYPKKAI
ELRDSFNKNDSLRSRIENRLGF

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG4781

COG function: function code C; Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Escherichia coli, GI1789858, Length=234, Percent_Identity=24.3589743589744, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17556807, Length=155, Percent_Identity=29.0322580645161, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17561436, Length=155, Percent_Identity=27.0967741935484, Blast_Score=66, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 66241; Mature: 66109

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLKESLKVMYQFKTDYLKVTLLLTILQAFVIGPFIYYFFFFILRVIGVPGITDANLGE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
IISSPVAVIMLLILALLILMFVYYELGFFIMMAIYQLRGESYTVFKIIQRLNVKAKYFLS
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHH
YQAVYFLLYFFLLLPIAGLSLPITITENLYLPHFITDELMKTSTGTWLYVIAMAIIFYIS
HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ARLVFALPYFIEDKSIKINGAIRKSWNYPKKRLFFMLLKWILLIVVMGFLVSIIATIIML
HHHHHHHHHHCCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLLLIEKINPGIAVVIAGITLTILQVIGFFVAGVFQGIIAQLLVRNAFTIEAQTTSVSRS
HHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHH
QFPHKKRFIVGGIIIFIIFSSFNVYAVNATLYEPNTKIIAHRGDTVNAVENTVEAIESAA
HCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHH
KAGADYSEIDIQETKDHQFVVFHDMTLRRLAGSSKRVADMTLQELQQTKITSGAYSSHIA
HCCCCCHHCCCEECCCCCEEEEECHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
SFDEIINAAKKNKIDLLVEVKLHGGESSDMVEQFITLLKKEKVADKYLVQSLNQPVIEKI
HHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
EHADPSLETGIILALNIGNLPKTSADFIVLEDFSINKRILTQAKQNNKKVFVWTVNKEKL
HCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHH
MQMYLRKNIDGIITNYPKKAIELRDSFNKNDSLRSRIENRLGF
HHHHHHHCCCHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SDLKESLKVMYQFKTDYLKVTLLLTILQAFVIGPFIYYFFFFILRVIGVPGITDANLGE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
IISSPVAVIMLLILALLILMFVYYELGFFIMMAIYQLRGESYTVFKIIQRLNVKAKYFLS
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHH
YQAVYFLLYFFLLLPIAGLSLPITITENLYLPHFITDELMKTSTGTWLYVIAMAIIFYIS
HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ARLVFALPYFIEDKSIKINGAIRKSWNYPKKRLFFMLLKWILLIVVMGFLVSIIATIIML
HHHHHHHHHHCCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLLLIEKINPGIAVVIAGITLTILQVIGFFVAGVFQGIIAQLLVRNAFTIEAQTTSVSRS
HHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHH
QFPHKKRFIVGGIIIFIIFSSFNVYAVNATLYEPNTKIIAHRGDTVNAVENTVEAIESAA
HCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHH
KAGADYSEIDIQETKDHQFVVFHDMTLRRLAGSSKRVADMTLQELQQTKITSGAYSSHIA
HCCCCCHHCCCEECCCCCEEEEECHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
SFDEIINAAKKNKIDLLVEVKLHGGESSDMVEQFITLLKKEKVADKYLVQSLNQPVIEKI
HHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
EHADPSLETGIILALNIGNLPKTSADFIVLEDFSINKRILTQAKQNNKKVFVWTVNKEKL
HCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHH
MQMYLRKNIDGIITNYPKKAIELRDSFNKNDSLRSRIENRLGF
HHHHHHHCCCHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]