| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is 116871822
Identifier: 116871822
GI number: 116871822
Start: 418953
End: 419561
Strand: Direct
Name: 116871822
Synonym: lwe0402
Alternate gene names: NA
Gene position: 418953-419561 (Clockwise)
Preceding gene: 116871821
Following gene: 116871823
Centisome position: 14.89
GC content: 29.72
Gene sequence:
>609_bases GTGGGAAACCAAAAACAATCTATTGATTACTTTGAAGTTAAAGGGATTGCTAAATTTCGAAATATGTTACATAAAGCCTA TAAAGATTTAACTTTTCCAGGACTAGACTTCCCGTATTGTGTACCTGACAAAGAATATAACTATTTATATTTCCCATTAG ATGCATTTGAAAATACGAAAGAAGGAAATCGAATTTTATCCGTACTTTTGTTAGATAAAGAAAAAGATATATATTTTCAC TCAGATGTTTTTGGAATGTTTTTAACAAGTTGGCTATTACTTGGAAAAATAAAAATAAAAAGTGTAGATGAATGGGATGG GGTATTCAGCGAGAACATCCTCACAAAAGGATCAAGAAATCCCATTAATTTAGTTGATATTAGCCCTACAATATTCCTGC TAGATGGGAGTATATTAATAAAGTTTGATCGTAGTTCTCATTTAGTCATCATTGGATTTTCTAATAAAATGGAGCAAATG AATAGTGAGATTCGACTTTCTAAAGATGAAGTGGTAGATTATTTTATTAAAAAAGATGCAGCAGATGAATCAGAAGCAGA AGATTTTAAAGAAGCATATTTAAAAAACTACTATTCAGTGAGCATTTAA
Upstream 100 bases:
>100_bases GTTTTCCCATTATTAGTCATTTTATCAGATTCAAGTGAGTTAATGGCGTAGTCAATGGAAAAATCGAATTTAGAACTGAT ATAAATGCAGGAGGGATAAA
Downstream 100 bases:
>100_bases GACTAAAAAATTAATAAAGAATCGTAATAACAATATAGAAAGTTGAATGAAAAATGGATTTTATTTTAAATATTTTAATT AATATTATAGCTTTTGTATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MGNQKQSIDYFEVKGIAKFRNMLHKAYKDLTFPGLDFPYCVPDKEYNYLYFPLDAFENTKEGNRILSVLLLDKEKDIYFH SDVFGMFLTSWLLLGKIKIKSVDEWDGVFSENILTKGSRNPINLVDISPTIFLLDGSILIKFDRSSHLVIIGFSNKMEQM NSEIRLSKDEVVDYFIKKDAADESEAEDFKEAYLKNYYSVSI
Sequences:
>Translated_202_residues MGNQKQSIDYFEVKGIAKFRNMLHKAYKDLTFPGLDFPYCVPDKEYNYLYFPLDAFENTKEGNRILSVLLLDKEKDIYFH SDVFGMFLTSWLLLGKIKIKSVDEWDGVFSENILTKGSRNPINLVDISPTIFLLDGSILIKFDRSSHLVIIGFSNKMEQM NSEIRLSKDEVVDYFIKKDAADESEAEDFKEAYLKNYYSVSI >Mature_201_residues GNQKQSIDYFEVKGIAKFRNMLHKAYKDLTFPGLDFPYCVPDKEYNYLYFPLDAFENTKEGNRILSVLLLDKEKDIYFHS DVFGMFLTSWLLLGKIKIKSVDEWDGVFSENILTKGSRNPINLVDISPTIFLLDGSILIKFDRSSHLVIIGFSNKMEQMN SEIRLSKDEVVDYFIKKDAADESEAEDFKEAYLKNYYSVSI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23454; Mature: 23323
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNQKQSIDYFEVKGIAKFRNMLHKAYKDLTFPGLDFPYCVPDKEYNYLYFPLDAFENTK CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEHHHCCCCC EGNRILSVLLLDKEKDIYFHSDVFGMFLTSWLLLGKIKIKSVDEWDGVFSENILTKGSRN CCCCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHCCEEECCCCHHCCHHHHHHCCCCCCC PINLVDISPTIFLLDGSILIKFDRSSHLVIIGFSNKMEQMNSEIRLSKDEVVDYFIKKDA CEEEEECCCEEEEEECEEEEEECCCCCEEEEECCCHHHHCCHHEECCHHHHHHHHHHCCC ADESEAEDFKEAYLKNYYSVSI CCCHHHHHHHHHHHHHEEEECC >Mature Secondary Structure GNQKQSIDYFEVKGIAKFRNMLHKAYKDLTFPGLDFPYCVPDKEYNYLYFPLDAFENTK CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEHHHCCCCC EGNRILSVLLLDKEKDIYFHSDVFGMFLTSWLLLGKIKIKSVDEWDGVFSENILTKGSRN CCCCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHCCEEECCCCHHCCHHHHHHCCCCCCC PINLVDISPTIFLLDGSILIKFDRSSHLVIIGFSNKMEQMNSEIRLSKDEVVDYFIKKDA CEEEEECCCEEEEEECEEEEEECCCCCEEEEECCCHHHHCCHHEECCHHHHHHHHHHCCC ADESEAEDFKEAYLKNYYSVSI CCCHHHHHHHHHHHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA