| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is ydfG [C]
Identifier: 116871812
GI number: 116871812
Start: 404528
End: 405274
Strand: Direct
Name: ydfG [C]
Synonym: lwe0392
Alternate gene names: 116871812
Gene position: 404528-405274 (Clockwise)
Preceding gene: 116871811
Following gene: 116871813
Centisome position: 14.37
GC content: 41.23
Gene sequence:
>747_bases ATGACTATCAAAAATAAAGTAATCATTATCACTGGAGCATCGTCTGGAATTGGTGAAGCAACAGCCTTACTTTTAGCTGA AAAAGGGGCGAAATTAGTTCTTGCTGCTCGTCGCGTGGAAAAGCTTGAAAAAATCGTTCAATCCATTAAAGCAAGTTCCG GAGAAGCAATTTTTATGAAAACGGATGTGACAAAACGCGAAGATAATAAGAAATTAGTAGAGTTAGCCATTGAAACATAT GGAAAAATAGATGCCATCTTTTTAAATGCAGGAATCATGCCGAACTCCCCATTATCCGCTTTAAAAGAAGACGAATGGGA GCAAATGATTGATATTAATATTAAGGGTGTCTTAAATGGTATTGCTGCCGTCTTACCTTCCTTCATCGCCCAAAAATCCG GACATATCATCGCAACTTCTTCTGTGGCAGGCTTAAAAGCATATCCTGGTGGAGCAGTATATGGTGCAACAAAATGGGCT GTTCGTGATTTGATGGAAGTTTTGCGAATGGAGTCAGCCCAAGAAGGAACCAACATCCGCACGGCAACTATTTATCCAGC CGCCATCAATACAGAGTTACTAGAAACCATCACAGATAAAGAAACAGAACAAGGGATGACAAGTTTATATAAACAATATG GCATCACCCCTGACCGCATCGCAAGCATTGTCGCATACGCCATTGATCAACCCGAAGACGTAACCATAAACGAATTCACC GTCGGACCAACCAGCCAACCATGGTAA
Upstream 100 bases:
>100_bases GATTCTACTGTTACAAAAGATGTTCCAGCAAACGTTATTGTCGCAGGAAATCCAGCCAAACAAATCCGTAAAATTATCGA GGAATAAGGAGAGATAACAA
Downstream 100 bases:
>100_bases GTAGAAAAACCTTGAATTGATTATTATCGATTCGAGGTTTTTTGGCATTGCAGGAGCTGATTAAACATGGTATCTTAAAT TGAAAACGCTTAAAAAGGAG
Product: short-chain dehydrogenase/reductase family protein
Products: NA
Alternate protein names: ORFA [H]
Number of amino acids: Translated: 248; Mature: 247
Protein sequence:
>248_residues MTIKNKVIIITGASSGIGEATALLLAEKGAKLVLAARRVEKLEKIVQSIKASSGEAIFMKTDVTKREDNKKLVELAIETY GKIDAIFLNAGIMPNSPLSALKEDEWEQMIDINIKGVLNGIAAVLPSFIAQKSGHIIATSSVAGLKAYPGGAVYGATKWA VRDLMEVLRMESAQEGTNIRTATIYPAAINTELLETITDKETEQGMTSLYKQYGITPDRIASIVAYAIDQPEDVTINEFT VGPTSQPW
Sequences:
>Translated_248_residues MTIKNKVIIITGASSGIGEATALLLAEKGAKLVLAARRVEKLEKIVQSIKASSGEAIFMKTDVTKREDNKKLVELAIETY GKIDAIFLNAGIMPNSPLSALKEDEWEQMIDINIKGVLNGIAAVLPSFIAQKSGHIIATSSVAGLKAYPGGAVYGATKWA VRDLMEVLRMESAQEGTNIRTATIYPAAINTELLETITDKETEQGMTSLYKQYGITPDRIASIVAYAIDQPEDVTINEFT VGPTSQPW >Mature_247_residues TIKNKVIIITGASSGIGEATALLLAEKGAKLVLAARRVEKLEKIVQSIKASSGEAIFMKTDVTKREDNKKLVELAIETYG KIDAIFLNAGIMPNSPLSALKEDEWEQMIDINIKGVLNGIAAVLPSFIAQKSGHIIATSSVAGLKAYPGGAVYGATKWAV RDLMEVLRMESAQEGTNIRTATIYPAAINTELLETITDKETEQGMTSLYKQYGITPDRIASIVAYAIDQPEDVTINEFTV GPTSQPW
Specific function: Unknown
COG id: COG4221
COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI109715829, Length=249, Percent_Identity=27.3092369477912, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI32483357, Length=232, Percent_Identity=29.3103448275862, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI20149619, Length=248, Percent_Identity=29.0322580645161, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI7706318, Length=198, Percent_Identity=28.7878787878788, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI4504505, Length=251, Percent_Identity=25.4980079681275, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI5031737, Length=213, Percent_Identity=27.6995305164319, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=29.3478260869565, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=27.9187817258883, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI40807363, Length=199, Percent_Identity=28.643216080402, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI31542939, Length=235, Percent_Identity=29.3617021276596, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI157739938, Length=206, Percent_Identity=26.6990291262136, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI126723750, Length=215, Percent_Identity=30.2325581395349, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI223718074, Length=263, Percent_Identity=26.615969581749, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI40254992, Length=227, Percent_Identity=25.1101321585903, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI32455239, Length=193, Percent_Identity=29.0155440414508, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI5031765, Length=193, Percent_Identity=29.0155440414508, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI7657478, Length=226, Percent_Identity=28.7610619469027, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI19923817, Length=242, Percent_Identity=24.7933884297521, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI142976729, Length=195, Percent_Identity=26.1538461538462, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI4503817, Length=189, Percent_Identity=28.042328042328, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI310128830, Length=208, Percent_Identity=25, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI310115468, Length=208, Percent_Identity=25, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI210032110, Length=191, Percent_Identity=26.1780104712042, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI4758504, Length=221, Percent_Identity=29.8642533936652, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI66933014, Length=199, Percent_Identity=32.1608040201005, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI4557649, Length=189, Percent_Identity=29.6296296296296, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI166795268, Length=204, Percent_Identity=26.9607843137255, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1787820, Length=245, Percent_Identity=28.9795918367347, Blast_Score=107, Evalue=5e-25, Organism=Escherichia coli, GI87082100, Length=196, Percent_Identity=36.2244897959184, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1786701, Length=228, Percent_Identity=26.3157894736842, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787526, Length=206, Percent_Identity=25.7281553398058, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787335, Length=201, Percent_Identity=27.8606965174129, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87082160, Length=208, Percent_Identity=29.3269230769231, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=24.7058823529412, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790717, Length=201, Percent_Identity=27.363184079602, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789208, Length=245, Percent_Identity=26.530612244898, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787905, Length=234, Percent_Identity=26.4957264957265, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788459, Length=196, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1788891, Length=243, Percent_Identity=29.2181069958848, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567345, Length=194, Percent_Identity=30.9278350515464, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17568967, Length=237, Percent_Identity=31.2236286919831, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17561402, Length=232, Percent_Identity=28.448275862069, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI71994604, Length=199, Percent_Identity=30.6532663316583, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17560676, Length=229, Percent_Identity=24.4541484716157, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17562910, Length=246, Percent_Identity=29.6747967479675, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI71997402, Length=245, Percent_Identity=28.5714285714286, Blast_Score=87, Evalue=5e-18, Organism=Caenorhabditis elegans, GI71994600, Length=191, Percent_Identity=28.7958115183246, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17538486, Length=258, Percent_Identity=29.4573643410853, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17538480, Length=244, Percent_Identity=28.6885245901639, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17560332, Length=245, Percent_Identity=27.3469387755102, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17562906, Length=239, Percent_Identity=26.7782426778243, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17508895, Length=193, Percent_Identity=26.9430051813472, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562904, Length=197, Percent_Identity=29.4416243654822, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI193204405, Length=203, Percent_Identity=28.0788177339901, Blast_Score=78, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562908, Length=200, Percent_Identity=27.5, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17564282, Length=200, Percent_Identity=26.5, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17559104, Length=194, Percent_Identity=31.4432989690722, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17544670, Length=203, Percent_Identity=29.5566502463054, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17551412, Length=255, Percent_Identity=27.4509803921569, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17570069, Length=245, Percent_Identity=25.3061224489796, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI72000259, Length=238, Percent_Identity=26.890756302521, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI193203115, Length=198, Percent_Identity=23.7373737373737, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI193203117, Length=200, Percent_Identity=23.5, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17563726, Length=205, Percent_Identity=25.8536585365854, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17562990, Length=207, Percent_Identity=28.0193236714976, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17560220, Length=200, Percent_Identity=28.5, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17560176, Length=196, Percent_Identity=31.6326530612245, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17565030, Length=259, Percent_Identity=26.2548262548263, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17531453, Length=245, Percent_Identity=26.530612244898, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560150, Length=250, Percent_Identity=26.4, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI25147288, Length=195, Percent_Identity=27.6923076923077, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17538182, Length=237, Percent_Identity=26.5822784810127, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=250, Percent_Identity=34, Blast_Score=120, Evalue=3e-28, Organism=Saccharomyces cerevisiae, GI6322861, Length=248, Percent_Identity=29.4354838709677, Blast_Score=96, Evalue=6e-21, Organism=Saccharomyces cerevisiae, GI6322227, Length=212, Percent_Identity=28.3018867924528, Blast_Score=86, Evalue=5e-18, Organism=Saccharomyces cerevisiae, GI6322226, Length=205, Percent_Identity=24.8780487804878, Blast_Score=70, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6322067, Length=176, Percent_Identity=28.4090909090909, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI23397609, Length=197, Percent_Identity=35.0253807106599, Blast_Score=115, Evalue=2e-26, Organism=Drosophila melanogaster, GI28571526, Length=239, Percent_Identity=28.8702928870293, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI24644339, Length=236, Percent_Identity=28.8135593220339, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI21357041, Length=193, Percent_Identity=32.1243523316062, Blast_Score=105, Evalue=2e-23, Organism=Drosophila melanogaster, GI24640492, Length=196, Percent_Identity=35.2040816326531, Blast_Score=104, Evalue=6e-23, Organism=Drosophila melanogaster, GI21358495, Length=239, Percent_Identity=29.7071129707113, Blast_Score=104, Evalue=6e-23, Organism=Drosophila melanogaster, GI281364892, Length=196, Percent_Identity=33.1632653061224, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI24663911, Length=256, Percent_Identity=29.296875, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24580925, Length=243, Percent_Identity=27.5720164609054, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI116007236, Length=254, Percent_Identity=26.3779527559055, Blast_Score=94, Evalue=8e-20, Organism=Drosophila melanogaster, GI18859837, Length=232, Percent_Identity=29.7413793103448, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI21355631, Length=176, Percent_Identity=30.6818181818182, Blast_Score=91, Evalue=6e-19, Organism=Drosophila melanogaster, GI28571387, Length=246, Percent_Identity=29.6747967479675, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI24641388, Length=252, Percent_Identity=29.7619047619048, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24648944, Length=240, Percent_Identity=28.75, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24641232, Length=253, Percent_Identity=27.6679841897233, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI281364494, Length=255, Percent_Identity=27.4509803921569, Blast_Score=85, Evalue=3e-17, Organism=Drosophila melanogaster, GI21355319, Length=229, Percent_Identity=27.0742358078603, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI116007234, Length=254, Percent_Identity=27.9527559055118, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24648693, Length=250, Percent_Identity=28.8, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI21355889, Length=250, Percent_Identity=28.8, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24639444, Length=238, Percent_Identity=28.1512605042017, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI17737361, Length=212, Percent_Identity=30.188679245283, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24643142, Length=194, Percent_Identity=27.8350515463918, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007238, Length=177, Percent_Identity=28.8135593220339, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24649181, Length=193, Percent_Identity=28.4974093264249, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI19921754, Length=206, Percent_Identity=28.6407766990291, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24665247, Length=205, Percent_Identity=26.3414634146341, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI221331216, Length=205, Percent_Identity=26.3414634146341, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI21357673, Length=214, Percent_Identity=26.6355140186916, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI24665243, Length=204, Percent_Identity=25.4901960784314, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI221331218, Length=204, Percent_Identity=25.4901960784314, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26773; Mature: 26642
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIKNKVIIITGASSGIGEATALLLAEKGAKLVLAARRVEKLEKIVQSIKASSGEAIFMK CCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE TDVTKREDNKKLVELAIETYGKIDAIFLNAGIMPNSPLSALKEDEWEQMIDINIKGVLNG CCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHH IAAVLPSFIAQKSGHIIATSSVAGLKAYPGGAVYGATKWAVRDLMEVLRMESAQEGTNIR HHHHHHHHHHHCCCCEEEECCCCCCEECCCCCEECHHHHHHHHHHHHHHHHCCCCCCCEE TATIYPAAINTELLETITDKETEQGMTSLYKQYGITPDRIASIVAYAIDQPEDVTINEFT EEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEE VGPTSQPW CCCCCCCC >Mature Secondary Structure TIKNKVIIITGASSGIGEATALLLAEKGAKLVLAARRVEKLEKIVQSIKASSGEAIFMK CCCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE TDVTKREDNKKLVELAIETYGKIDAIFLNAGIMPNSPLSALKEDEWEQMIDINIKGVLNG CCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHH IAAVLPSFIAQKSGHIIATSSVAGLKAYPGGAVYGATKWAVRDLMEVLRMESAQEGTNIR HHHHHHHHHHHCCCCEEEECCCCCCEECCCCCEECHHHHHHHHHHHHHHHHCCCCCCCEE TATIYPAAINTELLETITDKETEQGMTSLYKQYGITPDRIASIVAYAIDQPEDVTINEFT EEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEE VGPTSQPW CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1905979; 11679669 [H]