| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is 116871792
Identifier: 116871792
GI number: 116871792
Start: 387468
End: 387890
Strand: Direct
Name: 116871792
Synonym: lwe0372
Alternate gene names: NA
Gene position: 387468-387890 (Clockwise)
Preceding gene: 116871791
Following gene: 116871796
Centisome position: 13.77
GC content: 37.35
Gene sequence:
>423_bases ATGCGTCAATATATGAAAATGGTGCGCCCATTCGATTTTATTATTATTGTGTTATTGATTTTGGGTTCGTTTTTACCTTT AATATTATTTTCTGTCGCTGAAGCTAAGAATGCGGGCGATGATGTGATAGCTATTATTTCGCAGGACGGGGAAGTTATTC GGGAAATTCCGCTGACTGGCCACAAAGGAAATGAACAATTTACTATTAAAGGAAAAGGCACACAATATAATTTGATGGAA GTAGATGGCGAAAGAATTCGTATCAAAGAAGATAACAGCCCAGACCAAGTAGGCGTCAAAATGGGTTGGAAATCCAAAGC TGGTGACACCATTGTTTGTTTACCGCATAAAGTCTTCGTAGAAATTAAATCAACAAGCAAAACAAGCAAAGACCCTGATT CAGATTTAATTGTGCCAAATTAG
Upstream 100 bases:
>100_bases TATCAAGCGTTTAACTTATGAAGTAACCGAAATTGCGTTTGATGAGCCAGGGGTTAGTTTAGATTTTAACGCTAATCATA ATGGCTAGTTAGGAGAGTAA
Downstream 100 bases:
>100_bases AAAAAACCCAGTAATTTCATTTAAGAAATTGCTGGGTTTTTTCGATGGCATTATTAAGTCGTATAGTTTATTTTTCTGAA AATACATTATAATGCATATT
Product: putative secreted protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 140; Mature: 140
Protein sequence:
>140_residues MRQYMKMVRPFDFIIIVLLILGSFLPLILFSVAEAKNAGDDVIAIISQDGEVIREIPLTGHKGNEQFTIKGKGTQYNLME VDGERIRIKEDNSPDQVGVKMGWKSKAGDTIVCLPHKVFVEIKSTSKTSKDPDSDLIVPN
Sequences:
>Translated_140_residues MRQYMKMVRPFDFIIIVLLILGSFLPLILFSVAEAKNAGDDVIAIISQDGEVIREIPLTGHKGNEQFTIKGKGTQYNLME VDGERIRIKEDNSPDQVGVKMGWKSKAGDTIVCLPHKVFVEIKSTSKTSKDPDSDLIVPN >Mature_140_residues MRQYMKMVRPFDFIIIVLLILGSFLPLILFSVAEAKNAGDDVIAIISQDGEVIREIPLTGHKGNEQFTIKGKGTQYNLME VDGERIRIKEDNSPDQVGVKMGWKSKAGDTIVCLPHKVFVEIKSTSKTSKDPDSDLIVPN
Specific function: Unknown
COG id: COG5341
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15589; Mature: 15589
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQYMKMVRPFDFIIIVLLILGSFLPLILFSVAEAKNAGDDVIAIISQDGEVIREIPLTG CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECCCCC HKGNEQFTIKGKGTQYNLMEVDGERIRIKEDNSPDQVGVKMGWKSKAGDTIVCLPHKVFV CCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCCEEEEEECCCCCCCCEEEEECCEEEE EIKSTSKTSKDPDSDLIVPN EEECCCCCCCCCCCCCCCCC >Mature Secondary Structure MRQYMKMVRPFDFIIIVLLILGSFLPLILFSVAEAKNAGDDVIAIISQDGEVIREIPLTG CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECCCCC HKGNEQFTIKGKGTQYNLMEVDGERIRIKEDNSPDQVGVKMGWKSKAGDTIVCLPHKVFV CCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCCEEEEEECCCCCCCCEEEEECCEEEE EIKSTSKTSKDPDSDLIVPN EEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA