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The map label for this gene is yulB [H]

Identifier: 116871737

GI number: 116871737

Start: 342352

End: 343122

Strand: Direct

Name: yulB [H]

Synonym: lwe0317

Alternate gene names: 116871737

Gene position: 342352-343122 (Clockwise)

Preceding gene: 116871736

Following gene: 116871739

Centisome position: 12.17

GC content: 36.58

Gene sequence:

>771_bases
ATGTTAAGTGCAGCGAAGGAACGGCAACTAAAAATCGTTAATCGACTAAAAGTGGAACAATTTATGCGGATTATTGATTT
AGTGGAGCTTGTCAATTACAGCGAAGCCACTGTTAAACGGGACTTAGTAGAATTAGAAAAAGAAGGACTTGTAAGACGAA
CAAGAGGCGGCGCAATGATTATCGATAATAAAAAAATCGATTTGCCTTATTTAATGAAAATGAACGAGCGAAGTAATGAA
ACAAGCAAAATAAGAATTGCAGACATTGCTAAATCACTTATTCGTGATGATATGGTGATTTTCTTAGACTCGAGTTCCAC
ATCGCTGCATTTAATAGACGTTTTAAGTAAATTTGACGGTTTACAAATTATTACTAATGGGGTCATGACGGCTTCAATGC
TGTCAGAGTTTACTAATGCAAGAGTTAGTATTTTAGGAGGTTCCATTTTAACGAAGCGATATACGGTGAATGGTGCAAAA
GCATACAATGATGCCCTTACTTATAATGCAGATATTGCCTTTGTTTCTTGCCGAGGGATTGATTATGACAAAGGTGCAAC
AGAAACTCATGAAGGTGAAGCGCTCATCAAACAAGCTTTCAGGCGCCAATCAAGTTCGCTCGTTTTACTTGTTACAGAAG
AAAAAGTTGGACACAAATTTATGCATCAAAGCCTAGCATGCCATGATATTGATTATCTTATTACAGACTTCAAACTGGAC
ACTACAGTAGAAGAACAGTTTAAAGCCCATCAGATTACTTGTTTATATTAG

Upstream 100 bases:

>100_bases
ATTACACATTTTAAATACTACTGGTCAAGCAGATAAATACTAATATGAAGGGTAGAAGCGCGAGTTATAGTGCTTTTGCC
CTTTTAAGGAGTGGAAGAAT

Downstream 100 bases:

>100_bases
ATTTTGTACTTAAATAGGCAAAAATAATCGCAAGTACTAAAAGTAAAACAGGGACTACTAATAAACTCCCGAAAAAGTGA
ATGTCATTAAATTCTTCGCT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MLSAAKERQLKIVNRLKVEQFMRIIDLVELVNYSEATVKRDLVELEKEGLVRRTRGGAMIIDNKKIDLPYLMKMNERSNE
TSKIRIADIAKSLIRDDMVIFLDSSSTSLHLIDVLSKFDGLQIITNGVMTASMLSEFTNARVSILGGSILTKRYTVNGAK
AYNDALTYNADIAFVSCRGIDYDKGATETHEGEALIKQAFRRQSSSLVLLVTEEKVGHKFMHQSLACHDIDYLITDFKLD
TTVEEQFKAHQITCLY

Sequences:

>Translated_256_residues
MLSAAKERQLKIVNRLKVEQFMRIIDLVELVNYSEATVKRDLVELEKEGLVRRTRGGAMIIDNKKIDLPYLMKMNERSNE
TSKIRIADIAKSLIRDDMVIFLDSSSTSLHLIDVLSKFDGLQIITNGVMTASMLSEFTNARVSILGGSILTKRYTVNGAK
AYNDALTYNADIAFVSCRGIDYDKGATETHEGEALIKQAFRRQSSSLVLLVTEEKVGHKFMHQSLACHDIDYLITDFKLD
TTVEEQFKAHQITCLY
>Mature_256_residues
MLSAAKERQLKIVNRLKVEQFMRIIDLVELVNYSEATVKRDLVELEKEGLVRRTRGGAMIIDNKKIDLPYLMKMNERSNE
TSKIRIADIAKSLIRDDMVIFLDSSSTSLHLIDVLSKFDGLQIITNGVMTASMLSEFTNARVSILGGSILTKRYTVNGAK
AYNDALTYNADIAFVSCRGIDYDKGATETHEGEALIKQAFRRQSSSLVLLVTEEKVGHKFMHQSLACHDIDYLITDFKLD
TTVEEQFKAHQITCLY

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788069, Length=233, Percent_Identity=29.6137339055794, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789059, Length=249, Percent_Identity=27.710843373494, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1789519, Length=235, Percent_Identity=24.6808510638298, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790753, Length=225, Percent_Identity=26.6666666666667, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1789829, Length=246, Percent_Identity=24.390243902439, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI226510968, Length=230, Percent_Identity=24.7826086956522, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790635, Length=237, Percent_Identity=25.7383966244726, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28950; Mature: 28950

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSAAKERQLKIVNRLKVEQFMRIIDLVELVNYSEATVKRDLVELEKEGLVRRTRGGAMI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCEEE
IDNKKIDLPYLMKMNERSNETSKIRIADIAKSLIRDDMVIFLDSSSTSLHLIDVLSKFDG
EECCCCCCHHHEEECCCCCCCCEEEHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCC
LQIITNGVMTASMLSEFTNARVSILGGSILTKRYTVNGAKAYNDALTYNADIAFVSCRGI
CEEHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEEECCCHHHCCCEEECCCEEEEEEECC
DYDKGATETHEGEALIKQAFRRQSSSLVLLVTEEKVGHKFMHQSLACHDIDYLITDFKLD
CCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCHHHHHCCEEEC
TTVEEQFKAHQITCLY
CCHHHHHHHCEEEEEC
>Mature Secondary Structure
MLSAAKERQLKIVNRLKVEQFMRIIDLVELVNYSEATVKRDLVELEKEGLVRRTRGGAMI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCEEE
IDNKKIDLPYLMKMNERSNETSKIRIADIAKSLIRDDMVIFLDSSSTSLHLIDVLSKFDG
EECCCCCCHHHEEECCCCCCCCEEEHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCC
LQIITNGVMTASMLSEFTNARVSILGGSILTKRYTVNGAKAYNDALTYNADIAFVSCRGI
CEEHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEEECCCHHHCCCEEECCCEEEEEEECC
DYDKGATETHEGEALIKQAFRRQSSSLVLLVTEEKVGHKFMHQSLACHDIDYLITDFKLD
CCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCHHHHHCCEEEC
TTVEEQFKAHQITCLY
CCHHHHHHHCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]