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The map label for this gene is yulB [H]

Identifier: 116871728

GI number: 116871728

Start: 330136

End: 330900

Strand: Direct

Name: yulB [H]

Synonym: lwe0308

Alternate gene names: 116871728

Gene position: 330136-330900 (Clockwise)

Preceding gene: 116871717

Following gene: 116871729

Centisome position: 11.73

GC content: 35.03

Gene sequence:

>765_bases
ATGTTTCCATTTGAAAGACAAAACAAAATAATTCATCTACTAGACCAAAATAGCAAAATAACTGTACCAGAATTAAGTCG
TATCTTGGATGTCTCGATTAGCACCATCCGAAATGATTTATCTTCATTAGAAGAGAGCGGGATGATTAAAAAAGTACACG
GGGGTGCGGTACTTTTAAAAAGCGAAGAAAAATTTACTAATTTTAATGATCGGATTATCCGCAATATTGAAGAAAAAGAA
ATGATTGCAAAAGAAGCAGCGACTTTGGTTAAAAACAATCAAACAATTATCCTTGATGCCAGTTCAACAGCCCTTGCACT
CGCAAAAGAATTACATGGTTTTTCTAAACTGACTGTCATTACGAGTGGCCTTTATACAGCGATTGAACTAAAGGACAATC
CGAATATTAGCGTAATTTTAACTGGAGGGATTGTAACGACGAATTCTTTTACCCTTGAAGGGATTCTTGGCGCTAATTTA
ATTGAAAATATTCATGCGGACTTATGTTTTATGTCAGCAAAAGGTTTCACTATGGAAGAAGGCTTAACGGATTTCAACAT
TTATGAAACAGAACTAAAAAGACTTCTTGCCAAACGAACTAATAAACTGATTGCACTCCTAGACCATACAAAAATGGGCG
TAATCTCCACTGCAAGTATCACCGCAGCAGAAAATATCGATTTACTCATTACCGACAGTAAAATAAATAGAAGTTTATAT
AAAAAATTCCAAGATGCGGGACTTCCGGTCAAAATTGCAGAATAA

Upstream 100 bases:

>100_bases
TTTTGTTGTGTTTTATAAAATATATTTGTGTTTTGTTATTTTTTTGGTTAATATGTATATACATAAAGAAATTATTGATA
GATAAAAGGAGGGCGAGCAG

Downstream 100 bases:

>100_bases
AATAGAAAATAAACTCTTTGGGCGCTCGCTGCTTCAAAGAGTTTTTTTATTCGCAGTTTTAAGTGAAAAATGCTAATTTA
GTTTGTTCTATATGAATTAA

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MFPFERQNKIIHLLDQNSKITVPELSRILDVSISTIRNDLSSLEESGMIKKVHGGAVLLKSEEKFTNFNDRIIRNIEEKE
MIAKEAATLVKNNQTIILDASSTALALAKELHGFSKLTVITSGLYTAIELKDNPNISVILTGGIVTTNSFTLEGILGANL
IENIHADLCFMSAKGFTMEEGLTDFNIYETELKRLLAKRTNKLIALLDHTKMGVISTASITAAENIDLLITDSKINRSLY
KKFQDAGLPVKIAE

Sequences:

>Translated_254_residues
MFPFERQNKIIHLLDQNSKITVPELSRILDVSISTIRNDLSSLEESGMIKKVHGGAVLLKSEEKFTNFNDRIIRNIEEKE
MIAKEAATLVKNNQTIILDASSTALALAKELHGFSKLTVITSGLYTAIELKDNPNISVILTGGIVTTNSFTLEGILGANL
IENIHADLCFMSAKGFTMEEGLTDFNIYETELKRLLAKRTNKLIALLDHTKMGVISTASITAAENIDLLITDSKINRSLY
KKFQDAGLPVKIAE
>Mature_254_residues
MFPFERQNKIIHLLDQNSKITVPELSRILDVSISTIRNDLSSLEESGMIKKVHGGAVLLKSEEKFTNFNDRIIRNIEEKE
MIAKEAATLVKNNQTIILDASSTALALAKELHGFSKLTVITSGLYTAIELKDNPNISVILTGGIVTTNSFTLEGILGANL
IENIHADLCFMSAKGFTMEEGLTDFNIYETELKRLLAKRTNKLIALLDHTKMGVISTASITAAENIDLLITDSKINRSLY
KKFQDAGLPVKIAE

Specific function: Repressor Of The Gat Operon For Galacticol Transport And Metabolism. [C]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=254, Percent_Identity=31.496062992126, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1788069, Length=235, Percent_Identity=32.3404255319149, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1787540, Length=250, Percent_Identity=30.8, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789519, Length=248, Percent_Identity=27.4193548387097, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI226510968, Length=249, Percent_Identity=29.3172690763052, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1789829, Length=249, Percent_Identity=27.710843373494, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI87082344, Length=245, Percent_Identity=26.1224489795918, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI1790635, Length=257, Percent_Identity=29.5719844357977, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1787063, Length=229, Percent_Identity=27.0742358078603, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1790753, Length=248, Percent_Identity=24.5967741935484, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789170, Length=238, Percent_Identity=28.9915966386555, Blast_Score=81, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28065; Mature: 28065

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPFERQNKIIHLLDQNSKITVPELSRILDVSISTIRNDLSSLEESGMIKKVHGGAVLLK
CCCCCCCCCEEEEECCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEE
SEEKFTNFNDRIIRNIEEKEMIAKEAATLVKNNQTIILDASSTALALAKELHGFSKLTVI
CCHHHCCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCHHEEEE
TSGLYTAIELKDNPNISVILTGGIVTTNSFTLEGILGANLIENIHADLCFMSAKGFTMEE
ECCCEEEEEECCCCCEEEEEECCEEEECCEEEEHHHHHHHHHHHHHHEEEEECCCCCHHC
GLTDFNIYETELKRLLAKRTNKLIALLDHTKMGVISTASITAAENIDLLITDSKINRSLY
CCCCCEEHHHHHHHHHHHHHCCEEEEEECCCCCEEEECEEEEECCEEEEEECCHHHHHHH
KKFQDAGLPVKIAE
HHHHHCCCCEEECC
>Mature Secondary Structure
MFPFERQNKIIHLLDQNSKITVPELSRILDVSISTIRNDLSSLEESGMIKKVHGGAVLLK
CCCCCCCCCEEEEECCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEE
SEEKFTNFNDRIIRNIEEKEMIAKEAATLVKNNQTIILDASSTALALAKELHGFSKLTVI
CCHHHCCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCHHEEEE
TSGLYTAIELKDNPNISVILTGGIVTTNSFTLEGILGANLIENIHADLCFMSAKGFTMEE
ECCCEEEEEECCCCCEEEEEECCEEEECCEEEEHHHHHHHHHHHHHHEEEEECCCCCHHC
GLTDFNIYETELKRLLAKRTNKLIALLDHTKMGVISTASITAAENIDLLITDSKINRSLY
CCCCCEEHHHHHHHHHHHHHCCEEEEEECCCCCEEEECEEEEECCEEEEEECCHHHHHHH
KKFQDAGLPVKIAE
HHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]