| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is clpC [H]
Identifier: 116871616
GI number: 116871616
Start: 207016
End: 209478
Strand: Direct
Name: clpC [H]
Synonym: lwe0196
Alternate gene names: 116871616
Gene position: 207016-209478 (Clockwise)
Preceding gene: 116871615
Following gene: 116871617
Centisome position: 7.36
GC content: 39.63
Gene sequence:
>2463_bases ATGATGTTTGGACGATTTACGCAAAGAGCTCAGAAAGTACTCGCGTTGTCACAAGAAGAGGCGATGCGTTTGAATCATAG TAATTTAGGGACGGAACACATCCTATTAGGTCTAGTTAGAGAAGGCGAAGGAATTGCGGCGAAAGCTCTTTATGAACTGG GAATTAGTTCTGAAAAAGTGCAACAAGAGGTGGAAGGATTAATTGGTCATGGGGAAAAAGCTGTGACAACCATTCAATAT ACACCGCGAGCAAAAAAAGTAATTGAACTATCTATGGATGAGGCTCGAAAATTAGGGCATACTTATGTTGGTACAGAACA TATTTTACTTGGGCTTATTCGCGAAGGTGAAGGAGTTGCGGCTCGAGTTTTAAGCAACCTTGGTATTAGCTTGAATAAAG CGCGTCAGCAAGTTTTACAGCTTCTAGGTGGCGGAGATGCAACTGGTGCTGGCCGACAAACAAATACACAAGCAACACCG ACTTTGGATAGTTTGGCTCGAGATTTAACGGTTATTGCTCGGGAAGATAATTTGGACCCGGTAATTGGTCGCTCTAAAGA AATTCAACGTGTGATTGAGGTGCTTAGTCGCCGGACGAAAAACAATCCAGTTCTTATTGGGGAACCAGGTGTTGGTAAAA CAGCAATTGCAGAAGGCTTAGCGCAACAAATTGTTCGCAATGAAGTGCCTGAGACCTTGCGAGGAAAACGTGTAATGACA CTTGATATGGGTACTGTTGTTGCTGGTACAAAATATCGTGGTGAATTTGAAGACCGTTTGAAAAAAGTAATGGATGAAAT TCGTCAAGCTGGGAATGTAATTCTATTTATTGATGAACTCCATACTTTAATTGGCGCTGGTGGAGCGGAAGGTGCAATTG ATGCTTCGAATATCTTAAAACCACCTCTAGCTCGTGGTGAATTACAATGTATTGGTGCAACAACACTCGATGAATACCGT AAATACATTGAAAAAGACGCTGCACTTGAAAGACGTTTCCAACCTATTAAAGTAGACGAACCAACTGTGGAAGAATCGAT TCAAATTTTACATGGTTTGCGTGATCGTTATGAAGCGCATCACCGGGTTGCGATTACGGATGAAGCGCTAGAAGCTGCAG TTCGTTTATCAGACCGCTATATTTCAGACCGTTTCTTACCTGATAAAGCAATTGATGTTATTGATGAATCTGGTTCAAAA GTTCGTTTGAAATCTTTTACAACACCAAAAAATGTAAAAGAAATGGAGAACAATTTAACAGATTTGAAAAAAGAAAAAGA TGCGGCTGTGCAAGGACAAGAGTTTGAAAAAGCAGCGGCATTGCGAGATAAAGAACATAAACTCAAAAAATCATTAGAAG AAACTAAAGCTAATTGGCAAGAAAAGCAAGGACTTGATCATAGCGAAGTAACGGAAGATATTGTTGCGGAAGTAGTTGCA AGTTGGACTGGTATCCCAGTTGCAAAACTTGCAGAAACAGAAACAAATAAACTTCTTAATATGGAAAAACTTTTACATGA ACGTGTTATTGGACAAGATGCAGCCGTTAAAGCGGTATCTCTAGCAGTACGACGAGCTCGTGCTGGGCTTAAAGATCCAA AACGTCCAATTGGTTCCTTTATTTTCTTAGGTCCTACAGGTGTTGGTAAAACGGAACTTGCGCGCGCGCTTGCTGAGTCT ATGTTTGGGGATGAGGATTCGATGATTCGGATTGATATGTCCGAATACATGGAAAAATTCTCAACTGCTCGTTTAGTTGG AGCGCCTCCTGGTTATGTTGGTTATGAAGAAGGCGGCCAATTGACAGAAAAAGTTCGTCAAAAACCATATTCTGTAGTGC TGCTTGATGAAATTGAAAAAGCACATCCAGATGTATTTAATATGTTGCTACAAGTGCTTGATGATGGTCGTTTAACTGAT TCTAAAGGTCGTGTGGTTGATTTTAGAAATACAGTTATTATCATGACTTCTAATATCGGTGCTCAAGAAATGAAACAAGA TAAATCAATGGGCTTTAACGTGATTGATCCGCTTAAAGATCATAAGGCAATGGAACATCGCGTTTTACAAGATTTAAAAC AAGCTTTCCGACCGGAATTTATCAACCGGATTGACGAAACAATTGTATTCCATTCCCTACAAGAAAAAGAATTGAAACAA ATTGTTACGCTTCTTACTTCTCAATTAACAAAACGTCTTGCTGAACGTGATATCCATGTGAAATTGACTGAAGGTGCGAA AGCTAAGATTGCTAAAGATGGCTATGATCCTGAATACGGGGCGCGTCCTTTGAAACGAGCTATTCAAAAAGAAGTAGAAG ATATGCTTTCTGAAGAGTTACTTCGTGGAAACATAAAAGTAGGCGACAACGTAGAAATTGGAGTAAAAGAAGGAAAATTA GAAGTTAGAAAAAAAGCTACGCCTAAAAAGAAAGCGGCTCCCAAAAAAGTGAAATCTAAATAA
Upstream 100 bases:
>100_bases CGAGATATGGATGAATTAGAAGAGAAAGTAATAAGGGCCAAAGTGATTCGCGAGATTTTGGGCGATAAATAATGAGGCTT ACGATAAGGAGGAAACAACA
Downstream 100 bases:
>100_bases ATAATGAACCTTCCTTAATAATTTTTAAGGGAGGTTTTTCTATGGATAAGTCTTAAAATACTAGATTAGCGCTGAAAAAA CGAATTTGGCGAAAAGGCTT
Product: ClpB ATPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 820; Mature: 820
Protein sequence:
>820_residues MMFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQQEVEGLIGHGEKAVTTIQY TPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDATGAGRQTNTQATP TLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMT LDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASNILKPPLARGELQCIGATTLDEYR KYIEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYISDRFLPDKAIDVIDESGSK VRLKSFTTPKNVKEMENNLTDLKKEKDAAVQGQEFEKAAALRDKEHKLKKSLEETKANWQEKQGLDHSEVTEDIVAEVVA SWTGIPVAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES MFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDEIEKAHPDVFNMLLQVLDDGRLTD SKGRVVDFRNTVIIMTSNIGAQEMKQDKSMGFNVIDPLKDHKAMEHRVLQDLKQAFRPEFINRIDETIVFHSLQEKELKQ IVTLLTSQLTKRLAERDIHVKLTEGAKAKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIKVGDNVEIGVKEGKL EVRKKATPKKKAAPKKVKSK
Sequences:
>Translated_820_residues MMFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQQEVEGLIGHGEKAVTTIQY TPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDATGAGRQTNTQATP TLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMT LDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASNILKPPLARGELQCIGATTLDEYR KYIEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYISDRFLPDKAIDVIDESGSK VRLKSFTTPKNVKEMENNLTDLKKEKDAAVQGQEFEKAAALRDKEHKLKKSLEETKANWQEKQGLDHSEVTEDIVAEVVA SWTGIPVAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES MFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDEIEKAHPDVFNMLLQVLDDGRLTD SKGRVVDFRNTVIIMTSNIGAQEMKQDKSMGFNVIDPLKDHKAMEHRVLQDLKQAFRPEFINRIDETIVFHSLQEKELKQ IVTLLTSQLTKRLAERDIHVKLTEGAKAKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIKVGDNVEIGVKEGKL EVRKKATPKKKAAPKKVKSK >Mature_820_residues MMFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQQEVEGLIGHGEKAVTTIQY TPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDATGAGRQTNTQATP TLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMT LDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASNILKPPLARGELQCIGATTLDEYR KYIEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYISDRFLPDKAIDVIDESGSK VRLKSFTTPKNVKEMENNLTDLKKEKDAAVQGQEFEKAAALRDKEHKLKKSLEETKANWQEKQGLDHSEVTEDIVAEVVA SWTGIPVAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES MFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDEIEKAHPDVFNMLLQVLDDGRLTD SKGRVVDFRNTVIIMTSNIGAQEMKQDKSMGFNVIDPLKDHKAMEHRVLQDLKQAFRPEFINRIDETIVFHSLQEKELKQ IVTLLTSQLTKRLAERDIHVKLTEGAKAKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIKVGDNVEIGVKEGKL EVRKKATPKKKAAPKKVKSK
Specific function: Competence gene repressor; required for cell growth at high temperature. Negative regulator of comK expression. May interact with MecA to negatively regulate comK [H]
COG id: COG0542
COG function: function code O; ATPases with chaperone activity, ATP-binding subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 UVR domain [H]
Homologues:
Organism=Homo sapiens, GI13540606, Length=317, Percent_Identity=37.2239747634069, Blast_Score=212, Evalue=1e-54, Organism=Escherichia coli, GI1788943, Length=867, Percent_Identity=47.6355247981546, Blast_Score=742, Evalue=0.0, Organism=Escherichia coli, GI1787109, Length=815, Percent_Identity=38.0368098159509, Blast_Score=525, Evalue=1e-150, Organism=Saccharomyces cerevisiae, GI6320464, Length=706, Percent_Identity=48.4419263456091, Blast_Score=640, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6323002, Length=881, Percent_Identity=37.4574347332577, Blast_Score=520, Evalue=1e-148,
Paralogues:
None
Copy number: 560 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR013093 - InterPro: IPR003959 - InterPro: IPR018368 - InterPro: IPR001270 - InterPro: IPR019489 - InterPro: IPR004176 - InterPro: IPR023150 - InterPro: IPR001943 [H]
Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small; PF02151 UVR [H]
EC number: NA
Molecular weight: Translated: 91103; Mature: 91103
Theoretical pI: Translated: 7.95; Mature: 7.95
Prosite motif: PS50151 UVR ; PS00870 CLPAB_1 ; PS00871 CLPAB_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKV CCCCHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHH QQEVEGLIGHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVA HHHHHHHHCCCCHHEEEEEECCCHHHHHHHCHHHHHHCCCHHCCHHHHHHHHHHCCCCHH ARVLSNLGISLNKARQQVLQLLGGGDATGAGRQTNTQATPTLDSLARDLTVIAREDNLDP HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHEEEEECCCCCC VIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMT CCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCHHHCCCEEEE LDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASNILK EECCCEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEHHHHHHHHCCCCCCCCCCHHHHCC PPLARGELQCIGATTLDEYRKYIEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAH CCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH HRVAITDEALEAAVRLSDRYISDRFLPDKAIDVIDESGSKVRLKSFTTPKNVKEMENNLT CEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH DLKKEKDAAVQGQEFEKAAALRDKEHKLKKSLEETKANWQEKQGLDHSEVTEDIVAEVVA HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH SWTGIPVAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSF HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCE IFLGPTGVGKTELARALAESMFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQ EEECCCCCCHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCEEECCCCCCCCCCCCCH LTEKVRQKPYSVVLLDEIEKAHPDVFNMLLQVLDDGRLTDSKGRVVDFRNTVIIMTSNIG HHHHHHHCCCEEEEHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEEEECCCC AQEMKQDKSMGFNVIDPLKDHKAMEHRVLQDLKQAFRPEFINRIDETIVFHSLQEKELKQ HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH IVTLLTSQLTKRLAERDIHVKLTEGAKAKIAKDGYDPEYGARPLKRAIQKEVEDMLSEEL HHHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LRGNIKVGDNVEIGVKEGKLEVRKKATPKKKAAPKKVKSK HHCCCCCCCCEEEECCCCCHHHHHCCCCCHHCCCHHHCCC >Mature Secondary Structure MMFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKV CCCCHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHH QQEVEGLIGHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVA HHHHHHHHCCCCHHEEEEEECCCHHHHHHHCHHHHHHCCCHHCCHHHHHHHHHHCCCCHH ARVLSNLGISLNKARQQVLQLLGGGDATGAGRQTNTQATPTLDSLARDLTVIAREDNLDP HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHEEEEECCCCCC VIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMT CCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCHHHCCCEEEE LDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASNILK EECCCEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEHHHHHHHHCCCCCCCCCCHHHHCC PPLARGELQCIGATTLDEYRKYIEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAH CCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH HRVAITDEALEAAVRLSDRYISDRFLPDKAIDVIDESGSKVRLKSFTTPKNVKEMENNLT CEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH DLKKEKDAAVQGQEFEKAAALRDKEHKLKKSLEETKANWQEKQGLDHSEVTEDIVAEVVA HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH SWTGIPVAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSF HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCE IFLGPTGVGKTELARALAESMFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQ EEECCCCCCHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCEEECCCCCCCCCCCCCH LTEKVRQKPYSVVLLDEIEKAHPDVFNMLLQVLDDGRLTDSKGRVVDFRNTVIIMTSNIG HHHHHHHCCCEEEEHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEEEECCCC AQEMKQDKSMGFNVIDPLKDHKAMEHRVLQDLKQAFRPEFINRIDETIVFHSLQEKELKQ HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH IVTLLTSQLTKRLAERDIHVKLTEGAKAKIAKDGYDPEYGARPLKRAIQKEVEDMLSEEL HHHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LRGNIKVGDNVEIGVKEGKLEVRKKATPKKKAAPKKVKSK HHCCCCCCCCEEEECCCCCHHHHHCCCCCHHCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8016066; 7584024; 9384377; 8195092 [H]