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The map label for this gene is yaaA [H]

Identifier: 116871426

GI number: 116871426

Start: 4577

End: 4861

Strand: Direct

Name: yaaA [H]

Synonym: lwe0004

Alternate gene names: 116871426

Gene position: 4577-4861 (Clockwise)

Preceding gene: 116871425

Following gene: 116871427

Centisome position: 0.16

GC content: 37.19

Gene sequence:

>285_bases
TTGTATTATTGGCAAAACTTTAGTAAAATAGAAGGTAGTGATAAAAAAAGATTGGGCGTGAAATTTTTGGCTGAAACAGT
AAAGATAAATAGTGAGTTCGTAACGCTTGGTCAACTTTTACAAATGATTGATGTAGTTTCGACTGGCGGAATGGCAAAAG
CGTACCTTAGTGAAAATACGATTTACATCAACGGAGAGCAAGATAATCGCCGGGGGAAAAAGCTTCGTAATGGCGATGTA
ATCTTAGTTCCTGGCGTTGGAAAAGTAAAAATTGAGCAAGGGTAA

Upstream 100 bases:

>100_bases
AAAACGCCACAGAAGCTCATATTTTATTTTTTTTAATAAATAATATCCCCCCATTAGTTTTGCTTAAAAAAGCTGAAAAA
CGAATATATGAAAATATTCT

Downstream 100 bases:

>100_bases
TAGCAGATGCATTTAGAAAGCATTGTTTTAAGAAATTTCCGCAATTATGAAAACTTAGAACTAGAATTTTCCCCGTCTGT
GAATGTTTTTCTTGGAGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MYYWQNFSKIEGSDKKRLGVKFLAETVKINSEFVTLGQLLQMIDVVSTGGMAKAYLSENTIYINGEQDNRRGKKLRNGDV
ILVPGVGKVKIEQG

Sequences:

>Translated_94_residues
MYYWQNFSKIEGSDKKRLGVKFLAETVKINSEFVTLGQLLQMIDVVSTGGMAKAYLSENTIYINGEQDNRRGKKLRNGDV
ILVPGVGKVKIEQG
>Mature_94_residues
MYYWQNFSKIEGSDKKRLGVKFLAETVKINSEFVTLGQLLQMIDVVSTGGMAKAYLSENTIYINGEQDNRRGKKLRNGDV
ILVPGVGKVKIEQG

Specific function: Unknown

COG id: COG2501

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014330
- InterPro:   IPR002942 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10526; Mature: 10526

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYYWQNFSKIEGSDKKRLGVKFLAETVKINSEFVTLGQLLQMIDVVSTGGMAKAYLSENT
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCEEEEECCCE
IYINGEQDNRRGKKLRNGDVILVPGVGKVKIEQG
EEEECCCCCCCCCCCCCCCEEEECCCCEEEEECC
>Mature Secondary Structure
MYYWQNFSKIEGSDKKRLGVKFLAETVKINSEFVTLGQLLQMIDVVSTGGMAKAYLSENT
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCEEEEECCCE
IYINGEQDNRRGKKLRNGDVILVPGVGKVKIEQG
EEEECCCCCCCCCCCCCCCEEEECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2987847; 7584024; 9384377 [H]