Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 116696468

GI number: 116696468

Start: 2860779

End: 2861942

Strand: Direct

Name: yfdE [H]

Synonym: H16_B2532

Alternate gene names: 116696468

Gene position: 2860779-2861942 (Clockwise)

Preceding gene: 116696463

Following gene: 116696469

Centisome position: 98.22

GC content: 70.27

Gene sequence:

>1164_bases
ATGCTGCATCGTGCCCTGGAAGGAGTCCGGGTCCTGGACCTGTCGCGCATCCTGGCCGGTCCCTGGTGTACCCAGAACCT
GGCCGACCTGGGCGCCGAGGTAACCAAGGTCGAGCACCCGGAGCGCGGCGACGATACCCGCGGCTGGGGCCCGCCCTACC
TGGAAGCGCCCGAGGGCAGCGGCGACACCCGGCGCCTGTCCGGCTACTTCATCTGCTGCAACCGCGGCAAGCGCTCGGTC
GCGATCGACTACGGCACGCCCGAGGGCGCGGCGCAGGTACGTGAGCTGGCGCGCGAGGCCGACGTGCTGGTCGAGAACTA
CAAGGTCGGCACGCTGCGCCGCTACGGGCTGGACTACGACACGCTCAAGGCGCTCAACCCGCGCCTGGTCTACCTGTCGA
TCACCGGCTTCGGCCAGAGCGGGCCGATGGCGGACAAACCCGGCTACGACTATGTATTCCAGGGCATGGGCGGGCTGATG
AGCTACACCGGCCAGCCCGACGGCACGCCCGGCGCCGGGCCGCTGCGCACCGGCGTCGCCGTGGTCGACCTGAGCACCGG
CATGTATGCCACCTCCGCAGTCCTGGCCGCGCTGTACCAGCGCCAGGCGACCGGGCTCGGTGCGCACCTGGATATCGCGC
TGCTCGATGTCGCGGTGGCGATGAACGCCAACCAGGCTGCCAACTACCTGGTGTCGGGCCAGAACCCGCAGCGCAGCGGC
AACGCTCATCCCAACTGCGCGCCCTATGAGGTGTTCCGCTGCGCCGACGGCCACCTGATCCTGGCGATCGGCAATGACAG
CCAGTTTGCGCGCTTCTGCGCCGTTGCCGGCATGCCGGATCTTGCGCAGGACCCGCGCTATGCCACCAATTCCGCGCGCA
TCGAACACCTGCCCGCGCTGCGCGCCCTGCTGACCGATCTCTTCCCCACGCGCACCCGCGCTGCGTGGACCGATGCCTTC
GATGCGGCCGGCGTGCCCTGGGGGCCGATCCACACCATGGCCGAAGTCTTCGCCCACCCGCAGGTCCAGCACCGCGGGCT
GATGCAGATGGCCGAACACCCCGTCATGGGCCGCGTACCCATGGTGCGCAACCCGATGCTGGCCGGGCACGACCTGCCGC
TGCCACCGCCGCCGCTGCTGGGCGAACACAGCCCGGCGGGCTGA

Upstream 100 bases:

>100_bases
CATTCAAATCCCGCGAACGCGCCTTTCAAAACTCTCGACTGGTTCGCGCCAGGACCCCTCCCTATACTCCGCCGCACTGT
TGTCTGAAAGCGGAGTCGTC

Downstream 100 bases:

>100_bases
ACGGCGCGCAGCTACCCACGAGACCAAAAACACCGACACGGAGACACCGATGAAACCGACCTTCACCGCCATCGCGCTGC
TGGCGGCATGCGCAAGCGGC

Product: acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MLHRALEGVRVLDLSRILAGPWCTQNLADLGAEVTKVEHPERGDDTRGWGPPYLEAPEGSGDTRRLSGYFICCNRGKRSV
AIDYGTPEGAAQVRELAREADVLVENYKVGTLRRYGLDYDTLKALNPRLVYLSITGFGQSGPMADKPGYDYVFQGMGGLM
SYTGQPDGTPGAGPLRTGVAVVDLSTGMYATSAVLAALYQRQATGLGAHLDIALLDVAVAMNANQAANYLVSGQNPQRSG
NAHPNCAPYEVFRCADGHLILAIGNDSQFARFCAVAGMPDLAQDPRYATNSARIEHLPALRALLTDLFPTRTRAAWTDAF
DAAGVPWGPIHTMAEVFAHPQVQHRGLMQMAEHPVMGRVPMVRNPMLAGHDLPLPPPPLLGEHSPAG

Sequences:

>Translated_387_residues
MLHRALEGVRVLDLSRILAGPWCTQNLADLGAEVTKVEHPERGDDTRGWGPPYLEAPEGSGDTRRLSGYFICCNRGKRSV
AIDYGTPEGAAQVRELAREADVLVENYKVGTLRRYGLDYDTLKALNPRLVYLSITGFGQSGPMADKPGYDYVFQGMGGLM
SYTGQPDGTPGAGPLRTGVAVVDLSTGMYATSAVLAALYQRQATGLGAHLDIALLDVAVAMNANQAANYLVSGQNPQRSG
NAHPNCAPYEVFRCADGHLILAIGNDSQFARFCAVAGMPDLAQDPRYATNSARIEHLPALRALLTDLFPTRTRAAWTDAF
DAAGVPWGPIHTMAEVFAHPQVQHRGLMQMAEHPVMGRVPMVRNPMLAGHDLPLPPPPLLGEHSPAG
>Mature_387_residues
MLHRALEGVRVLDLSRILAGPWCTQNLADLGAEVTKVEHPERGDDTRGWGPPYLEAPEGSGDTRRLSGYFICCNRGKRSV
AIDYGTPEGAAQVRELAREADVLVENYKVGTLRRYGLDYDTLKALNPRLVYLSITGFGQSGPMADKPGYDYVFQGMGGLM
SYTGQPDGTPGAGPLRTGVAVVDLSTGMYATSAVLAALYQRQATGLGAHLDIALLDVAVAMNANQAANYLVSGQNPQRSG
NAHPNCAPYEVFRCADGHLILAIGNDSQFARFCAVAGMPDLAQDPRYATNSARIEHLPALRALLTDLFPTRTRAAWTDAF
DAAGVPWGPIHTMAEVFAHPQVQHRGLMQMAEHPVMGRVPMVRNPMLAGHDLPLPPPPLLGEHSPAG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=385, Percent_Identity=41.8181818181818, Blast_Score=323, Evalue=2e-88,
Organism=Homo sapiens, GI300863124, Length=411, Percent_Identity=39.1727493917275, Blast_Score=309, Evalue=2e-84,
Organism=Homo sapiens, GI13376042, Length=411, Percent_Identity=35.5231143552311, Blast_Score=265, Evalue=5e-71,
Organism=Homo sapiens, GI300863126, Length=385, Percent_Identity=36.1038961038961, Blast_Score=262, Evalue=3e-70,
Organism=Homo sapiens, GI266456254, Length=386, Percent_Identity=28.2383419689119, Blast_Score=141, Evalue=1e-33,
Organism=Homo sapiens, GI42794625, Length=386, Percent_Identity=28.2383419689119, Blast_Score=141, Evalue=1e-33,
Organism=Homo sapiens, GI266458397, Length=288, Percent_Identity=29.8611111111111, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI266458393, Length=267, Percent_Identity=30.7116104868914, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI266458395, Length=154, Percent_Identity=35.7142857142857, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI42822893, Length=154, Percent_Identity=35.7142857142857, Blast_Score=92, Evalue=6e-19,
Organism=Escherichia coli, GI87082093, Length=343, Percent_Identity=36.4431486880466, Blast_Score=254, Evalue=5e-69,
Organism=Escherichia coli, GI1788717, Length=408, Percent_Identity=30.1470588235294, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1786222, Length=348, Percent_Identity=25.8620689655172, Blast_Score=87, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=351, Percent_Identity=23.6467236467236, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI115535051, Length=345, Percent_Identity=24.3478260869565, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24648431, Length=381, Percent_Identity=42.7821522309711, Blast_Score=304, Evalue=6e-83,
Organism=Drosophila melanogaster, GI24585488, Length=366, Percent_Identity=25.6830601092896, Blast_Score=112, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41591; Mature: 41591

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHRALEGVRVLDLSRILAGPWCTQNLADLGAEVTKVEHPERGDDTRGWGPPYLEAPEGS
CCCHHHCCCHHHHHHHHHCCCCCHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
GDTRRLSGYFICCNRGKRSVAIDYGTPEGAAQVRELAREADVLVENYKVGTLRRYGLDYD
CCCEEECEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHH
TLKALNPRLVYLSITGFGQSGPMADKPGYDYVFQGMGGLMSYTGQPDGTPGAGPLRTGVA
HHHHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCCCCCCHHCCEE
VVDLSTGMYATSAVLAALYQRQATGLGAHLDIALLDVAVAMNANQAANYLVSGQNPQRSG
EEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHEEEECCCCCCCC
NAHPNCAPYEVFRCADGHLILAIGNDSQFARFCAVAGMPDLAQDPRYATNSARIEHLPAL
CCCCCCCHHHHEEECCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
RALLTDLFPTRTRAAWTDAFDAAGVPWGPIHTMAEVFAHPQVQHRGLMQMAEHPVMGRVP
HHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC
MVRNPMLAGHDLPLPPPPLLGEHSPAG
CCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLHRALEGVRVLDLSRILAGPWCTQNLADLGAEVTKVEHPERGDDTRGWGPPYLEAPEGS
CCCHHHCCCHHHHHHHHHCCCCCHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
GDTRRLSGYFICCNRGKRSVAIDYGTPEGAAQVRELAREADVLVENYKVGTLRRYGLDYD
CCCEEECEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHH
TLKALNPRLVYLSITGFGQSGPMADKPGYDYVFQGMGGLMSYTGQPDGTPGAGPLRTGVA
HHHHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCCCCCCHHCCEE
VVDLSTGMYATSAVLAALYQRQATGLGAHLDIALLDVAVAMNANQAANYLVSGQNPQRSG
EEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHEEEECCCCCCCC
NAHPNCAPYEVFRCADGHLILAIGNDSQFARFCAVAGMPDLAQDPRYATNSARIEHLPAL
CCCCCCCHHHHEEECCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
RALLTDLFPTRTRAAWTDAFDAAGVPWGPIHTMAEVFAHPQVQHRGLMQMAEHPVMGRVP
HHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC
MVRNPMLAGHDLPLPPPPLLGEHSPAG
CCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]