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The map label for this gene is intD [C]

Identifier: 116696315

GI number: 116696315

Start: 2690066

End: 2691106

Strand: Direct

Name: intD [C]

Synonym: H16_B2379

Alternate gene names: 116696315

Gene position: 2690066-2691106 (Clockwise)

Preceding gene: 116696313

Following gene: 116696316

Centisome position: 92.36

GC content: 56.58

Gene sequence:

>1041_bases
ATGGCAAACTTTGAGCACAGGGGCACCACGGTTCGTGCCCTAGTCCGCATGAAAGGCCAGCGAGTCAGCGCTACTTTCGA
CAATGAGAAGGCGGCGCATGAGTGGGCGCGGAAGACTGAAAAGCGCATCAGCGAAGGCGAAACCATCCGCAAGTACGATG
ACACCAGCGACCCTTCCGTCGCCTATCTCCTAGAGAAGTACGCCCGCGATGTTTCTGGTGGCAAGCGTGGGGCTAAGGTT
GAGCGCTATACGCTGACAGCAATGTCCCGCGACTTTCCGGAGATATTCGGCAAACGCGTAAGTGAGTTTCGCAAGGACGA
TGTGGAGGCGTACATCAAGAAGCGCGGCAGCACGACAAGCAGGTTTGGCCGCAAGGTCGCACCGGGCACGATAATTCGTG
AGGTGACGGTTCTGTCAGCGGTGTTTAGCTACGCCATTCGGCGCTGGGAAATGCCGTTCTTTAAGAGGGAGAACCCAGCC
CAAGGCATCGACAATAGGCCAAAGTCCACAGAACACAGGAAACGGCGCGTCAGTGACGACGAGGTCAAACTCATTTGCGC
ACAGCTCGACTATGTAGAGGGCACTGTCCCCAAAACGAGCAAGCAATGGACTGCATGGGTCTTTCAGTTCTGCCTAGCAA
CAGCAATGCGTAAGGGTGAAGTGCTTGCCGCAACGTGGCAGCACGTACACACCGACGAGCTATATATCCATTTGCCGGAA
ACCAAGAACGGCTACGCCCGGGACGTGCCGCTAAGCCCACGCGCAATCGCACTGCTGGCAAGCCTTAAGCAAGGCAAGGG
CGCTCAATTGGTCGCGCCAGTCAAATACAAGACCCTGGACAGCGCATTCTGGCGCGCCAAAACGGAGATCGGCATTCAGA
ACCTACACTGGCACGATAGTAGGCACGAAGCAACGACGCAGTTGGCAAAGAAGCTCACAAACACCCTTGAGCTTGCAGCC
GTGACCGGGCATAGGTCGCTGGCGATGCTGCATCGCTATTTCAACCCGACCGCGACAGAAATGGCGCGCAAGCTCGTATA
G

Upstream 100 bases:

>100_bases
CGTGTGTGTTGATGGTTTTTAGGTGCCCCAAGCCGGCGATTTGGGGCACTTCCGCCGTAGTATGGCCGTCCCAACAACAC
ACATATAGGGGTGCACTAAA

Downstream 100 bases:

>100_bases
AGGGGCGGCATCATGGAACATCATCAAGGTTTCCCCGGTCGCGAGTTGTACGAAATCCGGCGCGCTCACGCGATCCAACA
GCGCATGACTGAGCCACCCG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MANFEHRGTTVRALVRMKGQRVSATFDNEKAAHEWARKTEKRISEGETIRKYDDTSDPSVAYLLEKYARDVSGGKRGAKV
ERYTLTAMSRDFPEIFGKRVSEFRKDDVEAYIKKRGSTTSRFGRKVAPGTIIREVTVLSAVFSYAIRRWEMPFFKRENPA
QGIDNRPKSTEHRKRRVSDDEVKLICAQLDYVEGTVPKTSKQWTAWVFQFCLATAMRKGEVLAATWQHVHTDELYIHLPE
TKNGYARDVPLSPRAIALLASLKQGKGAQLVAPVKYKTLDSAFWRAKTEIGIQNLHWHDSRHEATTQLAKKLTNTLELAA
VTGHRSLAMLHRYFNPTATEMARKLV

Sequences:

>Translated_346_residues
MANFEHRGTTVRALVRMKGQRVSATFDNEKAAHEWARKTEKRISEGETIRKYDDTSDPSVAYLLEKYARDVSGGKRGAKV
ERYTLTAMSRDFPEIFGKRVSEFRKDDVEAYIKKRGSTTSRFGRKVAPGTIIREVTVLSAVFSYAIRRWEMPFFKRENPA
QGIDNRPKSTEHRKRRVSDDEVKLICAQLDYVEGTVPKTSKQWTAWVFQFCLATAMRKGEVLAATWQHVHTDELYIHLPE
TKNGYARDVPLSPRAIALLASLKQGKGAQLVAPVKYKTLDSAFWRAKTEIGIQNLHWHDSRHEATTQLAKKLTNTLELAA
VTGHRSLAMLHRYFNPTATEMARKLV
>Mature_345_residues
ANFEHRGTTVRALVRMKGQRVSATFDNEKAAHEWARKTEKRISEGETIRKYDDTSDPSVAYLLEKYARDVSGGKRGAKVE
RYTLTAMSRDFPEIFGKRVSEFRKDDVEAYIKKRGSTTSRFGRKVAPGTIIREVTVLSAVFSYAIRRWEMPFFKRENPAQ
GIDNRPKSTEHRKRRVSDDEVKLICAQLDYVEGTVPKTSKQWTAWVFQFCLATAMRKGEVLAATWQHVHTDELYIHLPET
KNGYARDVPLSPRAIALLASLKQGKGAQLVAPVKYKTLDSAFWRAKTEIGIQNLHWHDSRHEATTQLAKKLTNTLELAAV
TGHRSLAMLHRYFNPTATEMARKLV

Specific function: Integrase From The Cryptic Lambdoic Prophage Dlp12. Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From Th

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 39530; Mature: 39398

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANFEHRGTTVRALVRMKGQRVSATFDNEKAAHEWARKTEKRISEGETIRKYDDTSDPSV
CCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHH
AYLLEKYARDVSGGKRGAKVERYTLTAMSRDFPEIFGKRVSEFRKDDVEAYIKKRGSTTS
HHHHHHHHHHHCCCCCCCEEHHEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
RFGRKVAPGTIIREVTVLSAVFSYAIRRWEMPFFKRENPAQGIDNRPKSTEHRKRRVSDD
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCH
EVKLICAQLDYVEGTVPKTSKQWTAWVFQFCLATAMRKGEVLAATWQHVHTDELYIHLPE
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHCCCCEEEEECCC
TKNGYARDVPLSPRAIALLASLKQGKGAQLVAPVKYKTLDSAFWRAKTEIGIQNLHWHDS
CCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCC
RHEATTQLAKKLTNTLELAAVTGHRSLAMLHRYFNPTATEMARKLV
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure 
ANFEHRGTTVRALVRMKGQRVSATFDNEKAAHEWARKTEKRISEGETIRKYDDTSDPSV
CCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHH
AYLLEKYARDVSGGKRGAKVERYTLTAMSRDFPEIFGKRVSEFRKDDVEAYIKKRGSTTS
HHHHHHHHHHHCCCCCCCEEHHEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
RFGRKVAPGTIIREVTVLSAVFSYAIRRWEMPFFKRENPAQGIDNRPKSTEHRKRRVSDD
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCH
EVKLICAQLDYVEGTVPKTSKQWTAWVFQFCLATAMRKGEVLAATWQHVHTDELYIHLPE
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHCCCCEEEEECCC
TKNGYARDVPLSPRAIALLASLKQGKGAQLVAPVKYKTLDSAFWRAKTEIGIQNLHWHDS
CCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCC
RHEATTQLAKKLTNTLELAAVTGHRSLAMLHRYFNPTATEMARKLV
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]