Click here to switch to the map view.

The map label for this gene is ydeR [H]

Identifier: 116696233

GI number: 116696233

Start: 2598280

End: 2599434

Strand: Direct

Name: ydeR [H]

Synonym: H16_B2297

Alternate gene names: 116696233

Gene position: 2598280-2599434 (Clockwise)

Preceding gene: 116696230

Following gene: 116696236

Centisome position: 89.21

GC content: 73.07

Gene sequence:

>1155_bases
GTGCTGCTGCTTGCCGTCGGCGCGGGCCTGTCAGTCGCCTCGCTGTACTACAGCCAGCCCATGCTCGGGGTGATGGCACC
CGACCTGCATGCCTCCGATTCGGCAACCGGCGCCATCCCGACCCTGACGCAGCTCGGCTATGCGCTGGGCATCCTGCTGC
TGGCGCCGCTGGGCGACCGCTATGACCGCCGCCGCATCATCGTGGCCAAGGCAGTGGCGCTGGTCGGCGCCTTGCTGCTG
GCGGGCCTGGCGCCCGGCATTGGCGCCTTGCTGGTATCCAGCCTGGTGGTGGGCCTGGCCGCCACCATGGCCCAGGACAT
CGTGCCCGCTGCAGCGGCGCTGGCGCCCGCGGCGCAGCGCGGCAAGGTGGTCGGGACAGTCATGACCGGATTGCTGCTGG
GCATCCTGCTGTCGCGGGTGGTGAGCGGCTTCGTCGCCGCGCACTTCGGCTGGCGCGCCATGTTCATGATTGCGGCGGCC
AGCATCGCGGCGGTCGCGCTGGTTGCCCGGCGCCAGTTGCCGCGCTTCACGCCCACCACGGTGCTGCCGTATGGTGCGCT
GCTGGCCTCGCTGGCGGCGCTGTGGCGCGAGCATGGCGCCTTGCGCCGCGCGGCCCTGGCGCAGGGGCTGCTGTCGGTGG
GCTTCAGCGCGTTCTGGTCCACGCTGGCAGTGATGCTGCATGGCGCACCATTCCATCTCGGCAGCGAGGCCGCGGGGGCG
TTCGGCCTGGCCGGCGCCGCTGGCGCGCTGGGCGCGCCGCTTGCCGGGCGCCTTGCCGACCGCAGCGGGCCGGAGCGGGT
GACCCGGCTGGGCGCGGCACTGGCGGCGCTGTCGTTTGCCGCCATGCTGCTGACCCCGCTGGTATCGCCGCATGCGCAGT
TGTGGCTGATCGGCGCCAGCGCCATCGGGTTCGACCTCGGTGTCCAGATCGCCCTGGTCGCGCACCAGACCATCGTCTAT
GGCATCGATCCGGGCGCGCGCAGTCGCCTGAATGCCGTGCTGTTCGTCTGCATGTTCACCGGCATGGCCGTCGGCGCCGC
GCTCGGCAGCCTGGCACTGGCGCGTTTCGGCTGGACCGGCGTGGCTGCGCTGGCGAGCGCCGCCGCGCTGGCTGCGCTGG
CCGTGCGGCTGGCACCGCGGCGTGGCGCGCGCTGA

Upstream 100 bases:

>100_bases
ATCCAAACCTGCCTGCGGATCTCGCAACCTCGATATGTCCTCTGTTCCCGCCACCCCATCCGCCGCCACCATTGCCAGCC
CGCCCCTGCCGGGACGCCTG

Downstream 100 bases:

>100_bases
GGGCAGCCCCGGCCTGGCATGCTGAGCCTTCGCGCCGAGGCTGCCGGACCTCTACGCGACGGGCGCGAGCCCCTCCCCGT
CCGTGCCGGCCTCCTCGCCG

Product: major facilitator superfamily permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MLLLAVGAGLSVASLYYSQPMLGVMAPDLHASDSATGAIPTLTQLGYALGILLLAPLGDRYDRRRIIVAKAVALVGALLL
AGLAPGIGALLVSSLVVGLAATMAQDIVPAAAALAPAAQRGKVVGTVMTGLLLGILLSRVVSGFVAAHFGWRAMFMIAAA
SIAAVALVARRQLPRFTPTTVLPYGALLASLAALWREHGALRRAALAQGLLSVGFSAFWSTLAVMLHGAPFHLGSEAAGA
FGLAGAAGALGAPLAGRLADRSGPERVTRLGAALAALSFAAMLLTPLVSPHAQLWLIGASAIGFDLGVQIALVAHQTIVY
GIDPGARSRLNAVLFVCMFTGMAVGAALGSLALARFGWTGVAALASAAALAALAVRLAPRRGAR

Sequences:

>Translated_384_residues
MLLLAVGAGLSVASLYYSQPMLGVMAPDLHASDSATGAIPTLTQLGYALGILLLAPLGDRYDRRRIIVAKAVALVGALLL
AGLAPGIGALLVSSLVVGLAATMAQDIVPAAAALAPAAQRGKVVGTVMTGLLLGILLSRVVSGFVAAHFGWRAMFMIAAA
SIAAVALVARRQLPRFTPTTVLPYGALLASLAALWREHGALRRAALAQGLLSVGFSAFWSTLAVMLHGAPFHLGSEAAGA
FGLAGAAGALGAPLAGRLADRSGPERVTRLGAALAALSFAAMLLTPLVSPHAQLWLIGASAIGFDLGVQIALVAHQTIVY
GIDPGARSRLNAVLFVCMFTGMAVGAALGSLALARFGWTGVAALASAAALAALAVRLAPRRGAR
>Mature_384_residues
MLLLAVGAGLSVASLYYSQPMLGVMAPDLHASDSATGAIPTLTQLGYALGILLLAPLGDRYDRRRIIVAKAVALVGALLL
AGLAPGIGALLVSSLVVGLAATMAQDIVPAAAALAPAAQRGKVVGTVMTGLLLGILLSRVVSGFVAAHFGWRAMFMIAAA
SIAAVALVARRQLPRFTPTTVLPYGALLASLAALWREHGALRRAALAQGLLSVGFSAFWSTLAVMLHGAPFHLGSEAAGA
FGLAGAAGALGAPLAGRLADRSGPERVTRLGAALAALSFAAMLLTPLVSPHAQLWLIGASAIGFDLGVQIALVAHQTIVY
GIDPGARSRLNAVLFVCMFTGMAVGAALGSLALARFGWTGVAALASAAALAALAVRLAPRRGAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787880, Length=385, Percent_Identity=24.1558441558442, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 38704; Mature: 38704

Theoretical pI: Translated: 11.94; Mature: 11.94

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLLAVGAGLSVASLYYSQPMLGVMAPDLHASDSATGAIPTLTQLGYALGILLLAPLGDR
CEEEEECCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
YDRRRIIVAKAVALVGALLLAGLAPGIGALLVSSLVVGLAATMAQDIVPAAAALAPAAQR
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC
GKVVGTVMTGLLLGILLSRVVSGFVAAHFGWRAMFMIAAASIAAVALVARRQLPRFTPTT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
VLPYGALLASLAALWREHGALRRAALAQGLLSVGFSAFWSTLAVMLHGAPFHLGSEAAGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
FGLAGAAGALGAPLAGRLADRSGPERVTRLGAALAALSFAAMLLTPLVSPHAQLWLIGAS
HHCCCCCHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECH
AIGFDLGVQIALVAHQTIVYGIDPGARSRLNAVLFVCMFTGMAVGAALGSLALARFGWTG
HHHHHHHHHHHEEEHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
VAALASAAALAALAVRLAPRRGAR
HHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLLLAVGAGLSVASLYYSQPMLGVMAPDLHASDSATGAIPTLTQLGYALGILLLAPLGDR
CEEEEECCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
YDRRRIIVAKAVALVGALLLAGLAPGIGALLVSSLVVGLAATMAQDIVPAAAALAPAAQR
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC
GKVVGTVMTGLLLGILLSRVVSGFVAAHFGWRAMFMIAAASIAAVALVARRQLPRFTPTT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
VLPYGALLASLAALWREHGALRRAALAQGLLSVGFSAFWSTLAVMLHGAPFHLGSEAAGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
FGLAGAAGALGAPLAGRLADRSGPERVTRLGAALAALSFAAMLLTPLVSPHAQLWLIGAS
HHCCCCCHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECH
AIGFDLGVQIALVAHQTIVYGIDPGARSRLNAVLFVCMFTGMAVGAALGSLALARFGWTG
HHHHHHHHHHHEEEHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
VAALASAAALAALAVRLAPRRGAR
HHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]