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The map label for this gene is cph2 [H]

Identifier: 116695986

GI number: 116695986

Start: 2307038

End: 2308057

Strand: Direct

Name: cph2 [H]

Synonym: H16_B2050

Alternate gene names: 116695986

Gene position: 2307038-2308057 (Clockwise)

Preceding gene: 116695985

Following gene: 116695987

Centisome position: 79.21

GC content: 67.45

Gene sequence:

>1020_bases
ATGCAACCCGAATTACCCAACCGACCCGCAGCGCCTGCGGCCGACAAGGACTACCTTGCCATGGTGCTGCTGGTGGACGA
CCAGGCCATGGTCGGCGAAGCGGTGCGCCGCGCGCTCTCCACCGAAGCCGACATCGACTTCCACTACTGCGCGCAGCCCG
ACGAGGCCGTGGCGGTGGCGCAGCGGACCAAGCCCACCGTGATCCTGCAGGACCTGGTGATGCCGGGCGTGGACGGCCTG
ACGCTGGTGCAGCGCTATCGCGAGAACCCCGCCACGCGCGACATCCCCATCATCGTGCTTTCGACCAAGGAAGATGCCGC
GACCAAGGGCGCGGCGTTTGCCGCCGGCGCCAACGACTACCTGGTCAAGCTGCCCGACAGCATCGAGCTGATTGCGCGCA
TCCGCTACCACTCGCGCTCCTACCTGAACCAGCTGCAGCGCGACGAAGCCTATCGCGCGCTGCGGCAAAGCCAGCAACAA
CTGCTGGAAACCAACCTGGAGCTGCAGCGGCTGACCAATTCAGACGGCCTGACCGGCTTGTCCAACCGGCGCTATTTCGA
TGAATACCTCGGCGCGGAATGGCGCCGCGCGCTGCGCGAGCAAACCCAGGTGGCGCTGCTGATGATCGACGTCGACGCGT
TCAAGGCCTACAACGACACCTACGGCCACGTCGCCGGAGACGAGGTGCTGCGCCGCGTGGCCGCTGTGATCCGCGACAAT
TGCGTGCGCCCCACCGACCTGCCCGCGCGTTTTGGCGGAGAGGAATTCGCCATGGTGCTGCCGGCGACCTCGCCAGGCGG
CGTGCGGCTGCTGGCCGAAAAGGTGCGGCGCGCAGTGCAGGGGCTGGCCATTGCCCACGGCGGCTCCCCCACCGCCGACT
GCGTCACCGTCAGCATCGGCGGCGCCGTGCTGGTGCCCCAGCCTGACCAGGCGCCGAACCAGGTAGTGGAAGCCGCTGAT
GCAGGCCTCTACCAGGCCAAGCGCAATGGCCGCAACCAGGTGATGATGGCGCAAGGCTGA

Upstream 100 bases:

>100_bases
TGCGCCGCGGCTGGTGCAGGCATGCGGCGGCACCGTGCCGCTTTGACCCGATGCAATACGTCGCGGCCGGCACCGGGACC
GTGACACCCAGGAACTGAAC

Downstream 100 bases:

>100_bases
GTCACTGCAGCAGCACAGCCGCAACAACCAGTTACACACTGGCGGCCACCGGCCAACCGGGCCACCAGCCCGGCCAACGT
CCCGCCAGGCCCCGCACCTG

Product: response regulator

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MQPELPNRPAAPAADKDYLAMVLLVDDQAMVGEAVRRALSTEADIDFHYCAQPDEAVAVAQRTKPTVILQDLVMPGVDGL
TLVQRYRENPATRDIPIIVLSTKEDAATKGAAFAAGANDYLVKLPDSIELIARIRYHSRSYLNQLQRDEAYRALRQSQQQ
LLETNLELQRLTNSDGLTGLSNRRYFDEYLGAEWRRALREQTQVALLMIDVDAFKAYNDTYGHVAGDEVLRRVAAVIRDN
CVRPTDLPARFGGEEFAMVLPATSPGGVRLLAEKVRRAVQGLAIAHGGSPTADCVTVSIGGAVLVPQPDQAPNQVVEAAD
AGLYQAKRNGRNQVMMAQG

Sequences:

>Translated_339_residues
MQPELPNRPAAPAADKDYLAMVLLVDDQAMVGEAVRRALSTEADIDFHYCAQPDEAVAVAQRTKPTVILQDLVMPGVDGL
TLVQRYRENPATRDIPIIVLSTKEDAATKGAAFAAGANDYLVKLPDSIELIARIRYHSRSYLNQLQRDEAYRALRQSQQQ
LLETNLELQRLTNSDGLTGLSNRRYFDEYLGAEWRRALREQTQVALLMIDVDAFKAYNDTYGHVAGDEVLRRVAAVIRDN
CVRPTDLPARFGGEEFAMVLPATSPGGVRLLAEKVRRAVQGLAIAHGGSPTADCVTVSIGGAVLVPQPDQAPNQVVEAAD
AGLYQAKRNGRNQVMMAQG
>Mature_339_residues
MQPELPNRPAAPAADKDYLAMVLLVDDQAMVGEAVRRALSTEADIDFHYCAQPDEAVAVAQRTKPTVILQDLVMPGVDGL
TLVQRYRENPATRDIPIIVLSTKEDAATKGAAFAAGANDYLVKLPDSIELIARIRYHSRSYLNQLQRDEAYRALRQSQQQ
LLETNLELQRLTNSDGLTGLSNRRYFDEYLGAEWRRALREQTQVALLMIDVDAFKAYNDTYGHVAGDEVLRRVAAVIRDN
CVRPTDLPARFGGEEFAMVLPATSPGGVRLLAEKVRRAVQGLAIAHGGSPTADCVTVSIGGAVLVPQPDQAPNQVVEAAD
AGLYQAKRNGRNQVMMAQG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=39.7590361445783, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=36.8421052631579, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI87081881, Length=181, Percent_Identity=38.121546961326, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786584, Length=186, Percent_Identity=33.8709677419355, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788381, Length=183, Percent_Identity=31.6939890710383, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=33.5403726708075, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87082007, Length=179, Percent_Identity=32.4022346368715, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1788085, Length=176, Percent_Identity=31.8181818181818, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787541, Length=169, Percent_Identity=29.585798816568, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787056, Length=174, Percent_Identity=32.7586206896552, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081974, Length=156, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788956, Length=177, Percent_Identity=32.7683615819209, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87081977, Length=181, Percent_Identity=29.2817679558011, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 37110; Mature: 37110

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPELPNRPAAPAADKDYLAMVLLVDDQAMVGEAVRRALSTEADIDFHYCAQPDEAVAVA
CCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHH
QRTKPTVILQDLVMPGVDGLTLVQRYRENPATRDIPIIVLSTKEDAATKGAAFAAGANDY
HCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCHHCCCEEECCCCCE
LVKLPDSIELIARIRYHSRSYLNQLQRDEAYRALRQSQQQLLETNLELQRLTNSDGLTGL
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCC
SNRRYFDEYLGAEWRRALREQTQVALLMIDVDAFKAYNDTYGHVAGDEVLRRVAAVIRDN
CCCHHHHHHHCHHHHHHHHHHHCEEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
CVRPTDLPARFGGEEFAMVLPATSPGGVRLLAEKVRRAVQGLAIAHGGSPTADCVTVSIG
CCCCCCCCHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEEC
GAVLVPQPDQAPNQVVEAADAGLYQAKRNGRNQVMMAQG
CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECC
>Mature Secondary Structure
MQPELPNRPAAPAADKDYLAMVLLVDDQAMVGEAVRRALSTEADIDFHYCAQPDEAVAVA
CCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHH
QRTKPTVILQDLVMPGVDGLTLVQRYRENPATRDIPIIVLSTKEDAATKGAAFAAGANDY
HCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCHHCCCEEECCCCCE
LVKLPDSIELIARIRYHSRSYLNQLQRDEAYRALRQSQQQLLETNLELQRLTNSDGLTGL
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCC
SNRRYFDEYLGAEWRRALREQTQVALLMIDVDAFKAYNDTYGHVAGDEVLRRVAAVIRDN
CCCHHHHHHHCHHHHHHHHHHHCEEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
CVRPTDLPARFGGEEFAMVLPATSPGGVRLLAEKVRRAVQGLAIAHGGSPTADCVTVSIG
CCCCCCCCHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEEC
GAVLVPQPDQAPNQVVEAADAGLYQAKRNGRNQVMMAQG
CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]