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The map label for this gene is ytcD [H]

Identifier: 116695928

GI number: 116695928

Start: 2251069

End: 2251407

Strand: Direct

Name: ytcD [H]

Synonym: H16_B1992

Alternate gene names: 116695928

Gene position: 2251069-2251407 (Clockwise)

Preceding gene: 116695924

Following gene: 116695933

Centisome position: 77.29

GC content: 58.7

Gene sequence:

>339_bases
TTGGCTAACCGAAAAAACTACACCCCCGCGACTGCCGCAATCGATGTCGAAGCCGCATTCAAGCTGCTGGAAGGCCGCTG
GAAGCTGGTGATTTTGTTTCACCTTTTCGGTGGTCAGGTACAGCGCTTTTCGGACCTCGAGAGACTGATCCCCGGCATCA
CACAGAAGATGCTTGCCCAGCAGCTACGCCGCCTCGAAGCGGACGGCATCGTGACACGTACGGTCTATCATCAGGTGCCG
CCGAAGGTGGACTACCGCCTGACTGATTGGGGCCAGGCGTTGTGCCCGGCACTGGATGCGATCCTGACATGGGCGGAGCA
CCGTGAAGACTTTCCGTAG

Upstream 100 bases:

>100_bases
TCATGTTCATCGGGGTTTACCTCAACGTGAAGGTTTGCATGCCCCAATCATGGCGCTACAGTTACCGTATCGCAAGAACG
CACAAAAAAGTAAGTAACCC

Downstream 100 bases:

>100_bases
GCTGCGACGAGCTTGCGTGCGTGACGCTAGCTGTCATCCAGAACTCCAATTCGCAAAGTCGTCGACGTGGTCTCATCCGC
GATGGTCTCATGTCGCGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MANRKNYTPATAAIDVEAAFKLLEGRWKLVILFHLFGGQVQRFSDLERLIPGITQKMLAQQLRRLEADGIVTRTVYHQVP
PKVDYRLTDWGQALCPALDAILTWAEHREDFP

Sequences:

>Translated_112_residues
MANRKNYTPATAAIDVEAAFKLLEGRWKLVILFHLFGGQVQRFSDLERLIPGITQKMLAQQLRRLEADGIVTRTVYHQVP
PKVDYRLTDWGQALCPALDAILTWAEHREDFP
>Mature_111_residues
ANRKNYTPATAAIDVEAAFKLLEGRWKLVILFHLFGGQVQRFSDLERLIPGITQKMLAQQLRRLEADGIVTRTVYHQVPP
KVDYRLTDWGQALCPALDAILTWAEHREDFP

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=87, Percent_Identity=43.6781609195402, Blast_Score=72, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12861; Mature: 12730

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANRKNYTPATAAIDVEAAFKLLEGRWKLVILFHLFGGQVQRFSDLERLIPGITQKMLAQ
CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
QLRRLEADGIVTRTVYHQVPPKVDYRLTDWGQALCPALDAILTWAEHREDFP
HHHHHCCCCHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ANRKNYTPATAAIDVEAAFKLLEGRWKLVILFHLFGGQVQRFSDLERLIPGITQKMLAQ
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
QLRRLEADGIVTRTVYHQVPPKVDYRLTDWGQALCPALDAILTWAEHREDFP
HHHHHCCCCHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]