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The map label for this gene is yagI [H]

Identifier: 116695780

GI number: 116695780

Start: 2083379

End: 2084137

Strand: Direct

Name: yagI [H]

Synonym: H16_B1844

Alternate gene names: 116695780

Gene position: 2083379-2084137 (Clockwise)

Preceding gene: 116695769

Following gene: 116695781

Centisome position: 71.53

GC content: 66.27

Gene sequence:

>759_bases
ATGTCCGGCGTCACGGTGACCGCCATCGAGCGGGTGATCGATATCCTTGAAGCCTTCCAGGCAAACCAGCGGCCGCTGTC
GCTGACGGAGCTGGCGGAGGCGATAGACATTCCCAAGAGCACCTGCCACGCCATCGTCTCGACCCTGATGGCACGCGGCT
ACCTCTATTCCCTCACCCGTCCGCGCGCGCTCTATCCCACCCGGCGCATCTATGACGTGGCGCGCGACATCACCGAGAAA
GACCCGTTCGTGGAACGCGCCACGCCGGTGCTGGAGCGGCTGCGCGACGCCACGCGGGAAACCGTGATCCTTGGCAAGCG
GCAGGGTGAATCCGTGATCTACCTGCAGGTCATCGAAGGCGTGCACGCGATCCGCTACACGGCCAAGCCGGGGGAGTTCA
AGCCGCTGCACTCGAGCTCCATCGGCAAGGCCATCCTGGGCGGCCTGAAGGAGCAGGAGCTGCGCGGCTGGCTGGCCGGC
CGGGAACTGCCCGCCATCACCATGGCCACCAAGACCGACCCAGAGGCCCTCGTGCGCGACATCCAGGAAAGCCGGCGCGC
CGGCTACTTCGTCACGCGCGGCGAGAACGTCAGCGACGTCTGGGCCGTCGCGACCTTCCTCACGTTGAACAATGAGACCC
TGGCCATTGCCGTGGCAGGGCCGAAGAACCGGATGGAGACGTGCATCCCTGAGTGCGCGAAAGTGCTGGTGGCCACCTGC
AGCTTCCTGTCGCGGCAGGTGGCAGGCAACCACGCGTGA

Upstream 100 bases:

>100_bases
CGAACAAATGAGTACAATGCAGCGGAATACGGCCACGCCGCCGGCGTTTGTTCAGCCGGCCGAATTTCTTCCAGCCAGGT
GCAAGCGAAAGGAGGGGACT

Downstream 100 bases:

>100_bases
TGGCGCAGTGACGATGAGCCGGCTCCGCTACGCCTCGCTCGATGCCCTGCTGACCGAAGTGCGGGCTTGCCGCGCCTGTG
CGCCACACCTGCCGCTGGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MSGVTVTAIERVIDILEAFQANQRPLSLTELAEAIDIPKSTCHAIVSTLMARGYLYSLTRPRALYPTRRIYDVARDITEK
DPFVERATPVLERLRDATRETVILGKRQGESVIYLQVIEGVHAIRYTAKPGEFKPLHSSSIGKAILGGLKEQELRGWLAG
RELPAITMATKTDPEALVRDIQESRRAGYFVTRGENVSDVWAVATFLTLNNETLAIAVAGPKNRMETCIPECAKVLVATC
SFLSRQVAGNHA

Sequences:

>Translated_252_residues
MSGVTVTAIERVIDILEAFQANQRPLSLTELAEAIDIPKSTCHAIVSTLMARGYLYSLTRPRALYPTRRIYDVARDITEK
DPFVERATPVLERLRDATRETVILGKRQGESVIYLQVIEGVHAIRYTAKPGEFKPLHSSSIGKAILGGLKEQELRGWLAG
RELPAITMATKTDPEALVRDIQESRRAGYFVTRGENVSDVWAVATFLTLNNETLAIAVAGPKNRMETCIPECAKVLVATC
SFLSRQVAGNHA
>Mature_251_residues
SGVTVTAIERVIDILEAFQANQRPLSLTELAEAIDIPKSTCHAIVSTLMARGYLYSLTRPRALYPTRRIYDVARDITEKD
PFVERATPVLERLRDATRETVILGKRQGESVIYLQVIEGVHAIRYTAKPGEFKPLHSSSIGKAILGGLKEQELRGWLAGR
ELPAITMATKTDPEALVRDIQESRRAGYFVTRGENVSDVWAVATFLTLNNETLAIAVAGPKNRMETCIPECAKVLVATCS
FLSRQVAGNHA

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=219, Percent_Identity=28.7671232876712, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786715, Length=220, Percent_Identity=26.3636363636364, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87082359, Length=225, Percent_Identity=26.6666666666667, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788131, Length=185, Percent_Identity=25.9459459459459, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788581, Length=219, Percent_Identity=29.2237442922374, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 27821; Mature: 27690

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGVTVTAIERVIDILEAFQANQRPLSLTELAEAIDIPKSTCHAIVSTLMARGYLYSLTR
CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHCCC
PRALYPTRRIYDVARDITEKDPFVERATPVLERLRDATRETVILGKRQGESVIYLQVIEG
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEHHHHHH
VHAIRYTAKPGEFKPLHSSSIGKAILGGLKEQELRGWLAGRELPAITMATKTDPEALVRD
HHHHEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHH
IQESRRAGYFVTRGENVSDVWAVATFLTLNNETLAIAVAGPKNRMETCIPECAKVLVATC
HHHHHHCCEEEECCCCHHHHHHHHHHHEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHH
SFLSRQVAGNHA
HHHHHHHCCCCC
>Mature Secondary Structure 
SGVTVTAIERVIDILEAFQANQRPLSLTELAEAIDIPKSTCHAIVSTLMARGYLYSLTR
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHCCC
PRALYPTRRIYDVARDITEKDPFVERATPVLERLRDATRETVILGKRQGESVIYLQVIEG
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEHHHHHH
VHAIRYTAKPGEFKPLHSSSIGKAILGGLKEQELRGWLAGRELPAITMATKTDPEALVRD
HHHHEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHH
IQESRRAGYFVTRGENVSDVWAVATFLTLNNETLAIAVAGPKNRMETCIPECAKVLVATC
HHHHHHCCEEEECCCCHHHHHHHHHHHEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHH
SFLSRQVAGNHA
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]