BacMap

Definition	Ralstonia eutropha H16 chromosome 2, complete sequence.
Accession	NC_008314
Length	2,912,490

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The map label for this gene is yusZ [H]

Identifier: 116695741

GI number: 116695741

Start: 2042546

End: 2043289

Strand: Direct

Name: yusZ [H]

Synonym: H16_B1805

Alternate gene names: 116695741

Gene position: 2042546-2043289 (Clockwise)

Preceding gene: 116695738

Following gene: 116695742

Centisome position: 70.13

GC content: 65.59

Gene sequence:

>744_bases
ATGAAAACCGTGCTGATTACCGGCTGCTCCTCTGGCTATGGCCTTGAAACCGCGCGCCACTTCCACGCGCAGGGCTGGAA
CGTCATCGCCACCATGCGAACGCCGAACGAAGAACTCTTGCCCCGATCCCACCGGATCCGCGTGCTGGCGCTCGACGTGA
CGAAGCCCGACAGCATCGCCGCCACGCTTGCAGCGAGCGGAGCCATCGACGTGCTCGTCAACAACGCGGGCATCGGCCTG
TTTGGCGCCTTCGAGGCCACTCCGATGGCCACGACGCGCGAGGTGTTCGAGACCAACACGTTCGGCGTGATGGCGATGAC
CCAGGCGGTGCTGCCCCAGTTCCGTGCGCGCAGGTCGGGCGTGGTGGTGAACGTGACCTCGAGCACGACGCTGGCGCCGA
TGCCGATGGTAGCCGTCTACACCGCGAGCAAGATGGCCATCGAAGGCTTCACCGCATCGCTCGCGTTCGAGCTCGAAGCG
TTCAACGTGAGCGTGAAGCTGGTCGAGCCAGGCTACGGACCGACCACGCGCTTTACCAGCAACGGGGGACCGCGCATGGA
GGGCCTGATCCCCGAGGCATACGCGTCTTGCGCGCAGGGCATCTTTGCTTCCCTCTCGCAACCGGCAGCGGTGACGACCG
AGGCCGAGGTGGCCGAAGCGGTTTGGCGTGCCGCCAACGACAGGTCCGGGCTGCTTCGGTTTCCGGCAGGTGCCGATGCG
GTAGCGCTGGCTCATTCGGGATAA

Upstream 100 bases:

>100_bases
ATCGCCGGACGATTGCAAATGAAATCTGGACTTTTCATTGTAGGCAGTCCGTCGCATCCCCGCTATCGTTGCCGGCATCC
AAACCACCACCGAAACCCTC

Downstream 100 bases:

>100_bases
CCGTCGAAGGGTCTGGCCCTTCGACGGTTTGCCGCACCAGGTATCGGAGCCCAATCGCCCCGGAGGCTGGCGCATCCCCA
CACGCCCGAGGCATAATCGT

Product: dehydrogenase

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MKTVLITGCSSGYGLETARHFHAQGWNVIATMRTPNEELLPRSHRIRVLALDVTKPDSIAATLAASGAIDVLVNNAGIGL
FGAFEATPMATTREVFETNTFGVMAMTQAVLPQFRARRSGVVVNVTSSTTLAPMPMVAVYTASKMAIEGFTASLAFELEA
FNVSVKLVEPGYGPTTRFTSNGGPRMEGLIPEAYASCAQGIFASLSQPAAVTTEAEVAEAVWRAANDRSGLLRFPAGADA
VALAHSG

Sequences:

>Translated_247_residues
MKTVLITGCSSGYGLETARHFHAQGWNVIATMRTPNEELLPRSHRIRVLALDVTKPDSIAATLAASGAIDVLVNNAGIGL
FGAFEATPMATTREVFETNTFGVMAMTQAVLPQFRARRSGVVVNVTSSTTLAPMPMVAVYTASKMAIEGFTASLAFELEA
FNVSVKLVEPGYGPTTRFTSNGGPRMEGLIPEAYASCAQGIFASLSQPAAVTTEAEVAEAVWRAANDRSGLLRFPAGADA
VALAHSG
>Mature_247_residues
MKTVLITGCSSGYGLETARHFHAQGWNVIATMRTPNEELLPRSHRIRVLALDVTKPDSIAATLAASGAIDVLVNNAGIGL
FGAFEATPMATTREVFETNTFGVMAMTQAVLPQFRARRSGVVVNVTSSTTLAPMPMVAVYTASKMAIEGFTASLAFELEA
FNVSVKLVEPGYGPTTRFTSNGGPRMEGLIPEAYASCAQGIFASLSQPAAVTTEAEVAEAVWRAANDRSGLLRFPAGADA
VALAHSG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=181, Percent_Identity=43.0939226519337, Blast_Score=129, Evalue=2e-30,
Organism=Homo sapiens, GI20149619, Length=185, Percent_Identity=34.0540540540541, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI119392083, Length=182, Percent_Identity=35.7142857142857, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI223718074, Length=182, Percent_Identity=38.4615384615385, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI44680136, Length=185, Percent_Identity=34.0540540540541, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI44680133, Length=185, Percent_Identity=34.0540540540541, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI17738292, Length=185, Percent_Identity=34.0540540540541, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI40548397, Length=181, Percent_Identity=34.8066298342541, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI214010158, Length=181, Percent_Identity=34.8066298342541, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI214010156, Length=181, Percent_Identity=34.8066298342541, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI22758144, Length=181, Percent_Identity=34.8066298342541, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI150247226, Length=190, Percent_Identity=37.3684210526316, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI157739938, Length=191, Percent_Identity=27.7486910994764, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI19743808, Length=184, Percent_Identity=35.8695652173913, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI22507405, Length=186, Percent_Identity=37.0967741935484, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI7706318, Length=174, Percent_Identity=32.7586206896552, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI4504503, Length=183, Percent_Identity=32.7868852459016, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7705925, Length=173, Percent_Identity=31.7919075144509, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI50726952, Length=185, Percent_Identity=33.5135135135135, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI32483357, Length=190, Percent_Identity=29.4736842105263, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI4503817, Length=211, Percent_Identity=27.0142180094787, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI4557649, Length=188, Percent_Identity=27.6595744680851, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1786701, Length=188, Percent_Identity=35.1063829787234, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87082100, Length=183, Percent_Identity=37.1584699453552, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787820, Length=229, Percent_Identity=31.8777292576419, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787335, Length=178, Percent_Identity=30.8988764044944, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788459, Length=182, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786812, Length=178, Percent_Identity=29.7752808988764, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790717, Length=184, Percent_Identity=30.4347826086957, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789208, Length=185, Percent_Identity=31.3513513513514, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367365, Length=186, Percent_Identity=31.1827956989247, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562904, Length=189, Percent_Identity=34.3915343915344, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI193210355, Length=192, Percent_Identity=32.8125, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17570069, Length=181, Percent_Identity=31.4917127071823, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71997402, Length=180, Percent_Identity=31.6666666666667, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=191, Percent_Identity=32.9842931937173, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI115534660, Length=181, Percent_Identity=29.8342541436464, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=190, Percent_Identity=32.6315789473684, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=30.1960784313725, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=189, Percent_Identity=32.8042328042328, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17532177, Length=203, Percent_Identity=29.064039408867, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=245, Percent_Identity=28.1632653061224, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=187, Percent_Identity=31.5508021390374, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=197, Percent_Identity=30.9644670050761, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI25152911, Length=187, Percent_Identity=29.9465240641711, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=187, Percent_Identity=35.8288770053476, Blast_Score=88, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6322067, Length=175, Percent_Identity=32, Blast_Score=73, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6319635, Length=190, Percent_Identity=28.9473684210526, Blast_Score=65, Evalue=9e-12,
Organism=Drosophila melanogaster, GI21358495, Length=188, Percent_Identity=34.0425531914894, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI28571526, Length=243, Percent_Identity=33.7448559670782, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI23397609, Length=229, Percent_Identity=34.4978165938865, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24584744, Length=215, Percent_Identity=29.7674418604651, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI28574402, Length=215, Percent_Identity=29.7674418604651, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24584748, Length=211, Percent_Identity=27.9620853080569, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI161076933, Length=211, Percent_Identity=27.9620853080569, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24651139, Length=192, Percent_Identity=31.25, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24644339, Length=197, Percent_Identity=32.994923857868, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21357041, Length=243, Percent_Identity=31.2757201646091, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24584752, Length=210, Percent_Identity=29.0476190476191, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24643142, Length=172, Percent_Identity=30.8139534883721, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI116007236, Length=188, Percent_Identity=29.7872340425532, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24640442, Length=185, Percent_Identity=26.4864864864865, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI116007238, Length=182, Percent_Identity=29.6703296703297, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI19922066, Length=188, Percent_Identity=30.8510638297872, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25955; Mature: 25955

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVLITGCSSGYGLETARHFHAQGWNVIATMRTPNEELLPRSHRIRVLALDVTKPDSIA
CCEEEEEECCCCCCCCHHHHHHCCCCEEEEEEECCCHHHCCCCCEEEEEEEECCCCCHHH
ATLAASGAIDVLVNNAGIGLFGAFEATPMATTREVFETNTFGVMAMTQAVLPQFRARRSG
HHHHCCCEEEEEEECCCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
VVVNVTSSTTLAPMPMVAVYTASKMAIEGFTASLAFELEAFNVSVKLVEPGYGPTTRFTS
EEEEEECCCEECCCCEEEEEECCCEEECCEEEEEEEEEEEEEEEEEEECCCCCCCCCEEC
NGGPRMEGLIPEAYASCAQGIFASLSQPAAVTTEAEVAEAVWRAANDRSGLLRFPAGADA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHCCCCCCEEECCCCCCE
VALAHSG
EEEEECC
>Mature Secondary Structure
MKTVLITGCSSGYGLETARHFHAQGWNVIATMRTPNEELLPRSHRIRVLALDVTKPDSIA
CCEEEEEECCCCCCCCHHHHHHCCCCEEEEEEECCCHHHCCCCCEEEEEEEECCCCCHHH
ATLAASGAIDVLVNNAGIGLFGAFEATPMATTREVFETNTFGVMAMTQAVLPQFRARRSG
HHHHCCCEEEEEEECCCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
VVVNVTSSTTLAPMPMVAVYTASKMAIEGFTASLAFELEAFNVSVKLVEPGYGPTTRFTS
EEEEEECCCEECCCCEEEEEECCCEEECCEEEEEEEEEEEEEEEEEEECCCCCCCCCEEC
NGGPRMEGLIPEAYASCAQGIFASLSQPAAVTTEAEVAEAVWRAANDRSGLLRFPAGADA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHCCCCCCEEECCCCCCE
VALAHSG
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9384377; 8396117 [H]