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The map label for this gene is ydfH [C]

Identifier: 116695697

GI number: 116695697

Start: 2001851

End: 2002519

Strand: Direct

Name: ydfH [C]

Synonym: H16_B1761

Alternate gene names: 116695697

Gene position: 2001851-2002519 (Clockwise)

Preceding gene: 116695692

Following gene: 116695699

Centisome position: 68.73

GC content: 63.08

Gene sequence:

>669_bases
ATGACATCCAGTACTGACGTAAGAAACCTGGCCGAGCGGGTCACGGAGCAGATTCGCCAGCGCATCGTGCATGGCGAATT
CGCGCCCGGGCAGCGCTTGTCGGAAGCCGCGCTTAGCGAGAGCCTGCAGATCTCGCGCAACACCTTGCGCGAGACCTTTC
GCGTGCTGACCAAGGAAGGCCTGCTCAAGCACGAACCCAACCGCGGGGTATCCGTGGCAATTCCCAGCATTGCGGCCATC
ATCGACATCTACCGCGTGCGCCGCATGATCGAGTGCCAGGCCATCGCCCAGGCCTACCCCAGCCATCCAGCCAGGAAGCA
CCTGCGCGAAGCGGTGGAAATGGGACTGCGCTGCCGCGACAGCGGCGACTGGCAAGGCGCGGGTACCGCCAATATGGAGT
TCCATATGGCGATCGTGGAACTGGCCGACAGCGAGCGGCTGAACGTGATGTTCGCCCACCTGCTGGCCGAGCTGCGCCTG
GCTTTCGGCATGCTGCAGGATCCCGAATTCCTGCATGGCCCATATGTCGAGCTGAACCAGCACATCCTGCAGTTGTTCGA
GGCGGGCAAGCTCGCAGAGTGTGCCGCAGCCCTCAACGACTACCTGGTGCAGTCCGAGCGCATCGTGCTGTCGGTTTGCG
CCCGGCACCCGATTTTCAAGGGGCGTTGA

Upstream 100 bases:

>100_bases
GGGCAGACTTCGCACCAATCTTGTGCCTATTGTTCAACAAAGTGAGATAACATCGCCGCACGGGGCATGCCTGAACCTGT
CGCCCCTGACGCAAGCCAAC

Downstream 100 bases:

>100_bases
ACGCCGGTGCGGCGCATCCATGCATAGCTGCTGCACGCCGAGCCGCAATGGCCCCCGCCTGCTCAAGATGCGGAGCCATG
CATTGTCGTCGGTAAGGCGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; GntR-Family Transcriptional Regulator; Transcriptional Regulator; GntR Family Regulatory; Transcriptional Regulator Protein; GntR Family Regulatory Protein; GntR Domain-Containing Protein; Transcriptional Regulator GntR; HTH-Type Transcriptional Regulator YdhC; Transcriptional Regulator Protein GntR Family; Transcriptional Regulator Gntr Family; GntR Family Transcription Regulator; GntR Domain Protein; Transcription Regulator; Transcriptional Regulator Of Car Operon; Transcriptional Regulator GntR Family Protein; Regulatory Protein GntR HTH

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MTSSTDVRNLAERVTEQIRQRIVHGEFAPGQRLSEAALSESLQISRNTLRETFRVLTKEGLLKHEPNRGVSVAIPSIAAI
IDIYRVRRMIECQAIAQAYPSHPARKHLREAVEMGLRCRDSGDWQGAGTANMEFHMAIVELADSERLNVMFAHLLAELRL
AFGMLQDPEFLHGPYVELNQHILQLFEAGKLAECAAALNDYLVQSERIVLSVCARHPIFKGR

Sequences:

>Translated_222_residues
MTSSTDVRNLAERVTEQIRQRIVHGEFAPGQRLSEAALSESLQISRNTLRETFRVLTKEGLLKHEPNRGVSVAIPSIAAI
IDIYRVRRMIECQAIAQAYPSHPARKHLREAVEMGLRCRDSGDWQGAGTANMEFHMAIVELADSERLNVMFAHLLAELRL
AFGMLQDPEFLHGPYVELNQHILQLFEAGKLAECAAALNDYLVQSERIVLSVCARHPIFKGR
>Mature_221_residues
TSSTDVRNLAERVTEQIRQRIVHGEFAPGQRLSEAALSESLQISRNTLRETFRVLTKEGLLKHEPNRGVSVAIPSIAAII
DIYRVRRMIECQAIAQAYPSHPARKHLREAVEMGLRCRDSGDWQGAGTANMEFHMAIVELADSERLNVMFAHLLAELRLA
FGMLQDPEFLHGPYVELNQHILQLFEAGKLAECAAALNDYLVQSERIVLSVCARHPIFKGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24996; Mature: 24865

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSTDVRNLAERVTEQIRQRIVHGEFAPGQRLSEAALSESLQISRNTLRETFRVLTKEG
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLKHEPNRGVSVAIPSIAAIIDIYRVRRMIECQAIAQAYPSHPARKHLREAVEMGLRCRD
HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
SGDWQGAGTANMEFHMAIVELADSERLNVMFAHLLAELRLAFGMLQDPEFLHGPYVELNQ
CCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHH
HILQLFEAGKLAECAAALNDYLVQSERIVLSVCARHPIFKGR
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TSSTDVRNLAERVTEQIRQRIVHGEFAPGQRLSEAALSESLQISRNTLRETFRVLTKEG
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLKHEPNRGVSVAIPSIAAIIDIYRVRRMIECQAIAQAYPSHPARKHLREAVEMGLRCRD
HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
SGDWQGAGTANMEFHMAIVELADSERLNVMFAHLLAELRLAFGMLQDPEFLHGPYVELNQ
CCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHH
HILQLFEAGKLAECAAALNDYLVQSERIVLSVCARHPIFKGR
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA