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The map label for this gene is rbcR [H]

Identifier: 116695644

GI number: 116695644

Start: 1938627

End: 1939568

Strand: Direct

Name: rbcR [H]

Synonym: H16_B1705

Alternate gene names: 116695644

Gene position: 1938627-1939568 (Clockwise)

Preceding gene: 116695637

Following gene: 116695645

Centisome position: 66.56

GC content: 62.1

Gene sequence:

>942_bases
ATGAGGAACGCCACACTGCGGCAGTTGAAGGTCTTTGAGACCGTTGCCCGCCATATGAGCTTTTCACGCGCTGCCGAGGA
ACTGCACCTGACGCAGCCCGCGGTATCGACCCAGGTGCGCCAGCTGGAGCACCACGTGGGGCTGCCCCTGTTCGAGCAGT
TGGGCAAGAAGATCTACCTGACCCCGGCGGGCCACGAGATGCTGCATTACAGTCGCAGCATCATCCAGCAGTTCCGCGAG
GCCGAAGACGCCATGTCCCAGCTCAAGGGCATCTCCGGCGGCCGGCTCAACGTGGCGGTGATCAGCGCCGGCGACTATTT
CTTTCCGCGCCTGCTGGCCGAGTTCATGAACCGCCATGAAGGCGTGACGCTGAACCTTGCCGTGCATAACCGCGAGGAAT
TGCTGCACCAGCTGGCCGGCAACCTGACCGACCTGGCGGTGATGGTGCGTCCGCCCGAAGGCATGGACACCATCAACGAG
GCCTTCGCCCCCCATCCCTATGTCATCGTGGCTGCGCCCACCCACCCGCTGGTCGGACAGCGCAATATCCCGCTGGCCGA
GCTGGCTGATGAAGCCTTCGTTTCACGCGAGAAAGGCTCGGATACCTGGAATTCAATGCAGGAGGGCTTTGCCGGGCGTC
TGTCGAACATGCGCATCGCGATGGAGATCAAGAGCACCGAGACCATCAAGCAGGCCGTGATCGCCAATATGGGCATCGCC
TTCCTGTCGGCGCACACGGTCGGCCTGGAATTGCAGGCCGGCAAGCTCGCGGTGCTGGACATCGAGGGCTTCCCGGTGAT
GCTCAACTGGTATGTGGTGCACCGCAAGAACAAGCGGCTGCCACCGGTGGCGCTGGCGTTCAAGCAGTTCCTGATGGAGG
AAGGCGCGGGACTGATCGAGCGGATTACCGGGGTGGAAGGTTTGATCAGTCAGAATGCATAA

Upstream 100 bases:

>100_bases
GCAAATCCGACGATTGATGCTACTTGAATCTAAGATCAGCACTGCATAAAGTTTTTTATCGTTTATATAGCCAATCGTTT
ATATATTGCACGGGACGAGG

Downstream 100 bases:

>100_bases
ACAATTGATTATGGTTTCGCTATGAAACTTTAATTATCGTAAATCATCCGCGGTCCCTATGCTTGTCTCAACCCAACCGC
TACAGCGCATCTGAGGAGAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MRNATLRQLKVFETVARHMSFSRAAEELHLTQPAVSTQVRQLEHHVGLPLFEQLGKKIYLTPAGHEMLHYSRSIIQQFRE
AEDAMSQLKGISGGRLNVAVISAGDYFFPRLLAEFMNRHEGVTLNLAVHNREELLHQLAGNLTDLAVMVRPPEGMDTINE
AFAPHPYVIVAAPTHPLVGQRNIPLAELADEAFVSREKGSDTWNSMQEGFAGRLSNMRIAMEIKSTETIKQAVIANMGIA
FLSAHTVGLELQAGKLAVLDIEGFPVMLNWYVVHRKNKRLPPVALAFKQFLMEEGAGLIERITGVEGLISQNA

Sequences:

>Translated_313_residues
MRNATLRQLKVFETVARHMSFSRAAEELHLTQPAVSTQVRQLEHHVGLPLFEQLGKKIYLTPAGHEMLHYSRSIIQQFRE
AEDAMSQLKGISGGRLNVAVISAGDYFFPRLLAEFMNRHEGVTLNLAVHNREELLHQLAGNLTDLAVMVRPPEGMDTINE
AFAPHPYVIVAAPTHPLVGQRNIPLAELADEAFVSREKGSDTWNSMQEGFAGRLSNMRIAMEIKSTETIKQAVIANMGIA
FLSAHTVGLELQAGKLAVLDIEGFPVMLNWYVVHRKNKRLPPVALAFKQFLMEEGAGLIERITGVEGLISQNA
>Mature_313_residues
MRNATLRQLKVFETVARHMSFSRAAEELHLTQPAVSTQVRQLEHHVGLPLFEQLGKKIYLTPAGHEMLHYSRSIIQQFRE
AEDAMSQLKGISGGRLNVAVISAGDYFFPRLLAEFMNRHEGVTLNLAVHNREELLHQLAGNLTDLAVMVRPPEGMDTINE
AFAPHPYVIVAAPTHPLVGQRNIPLAELADEAFVSREKGSDTWNSMQEGFAGRLSNMRIAMEIKSTETIKQAVIANMGIA
FLSAHTVGLELQAGKLAVLDIEGFPVMLNWYVVHRKNKRLPPVALAFKQFLMEEGAGLIERITGVEGLISQNA

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=288, Percent_Identity=28.4722222222222, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI157672245, Length=194, Percent_Identity=32.9896907216495, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788748, Length=308, Percent_Identity=26.2987012987013, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790399, Length=244, Percent_Identity=25.4098360655738, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI87082132, Length=309, Percent_Identity=26.537216828479, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788887, Length=198, Percent_Identity=30.8080808080808, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786401, Length=309, Percent_Identity=26.8608414239482, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787530, Length=249, Percent_Identity=24.4979919678715, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789173, Length=302, Percent_Identity=26.4900662251656, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI145693105, Length=244, Percent_Identity=22.9508196721311, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1787879, Length=249, Percent_Identity=27.3092369477912, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789204, Length=318, Percent_Identity=23.5849056603774, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI48994962, Length=155, Percent_Identity=31.6129032258064, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787601, Length=297, Percent_Identity=21.5488215488215, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI145693193, Length=177, Percent_Identity=29.9435028248588, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI87081904, Length=198, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787949, Length=92, Percent_Identity=40.2173913043478, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI2367136, Length=252, Percent_Identity=24.6031746031746, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787806, Length=304, Percent_Identity=27.3026315789474, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34775; Mature: 34775

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNATLRQLKVFETVARHMSFSRAAEELHLTQPAVSTQVRQLEHHVGLPLFEQLGKKIYL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHCCCEEEE
TPAGHEMLHYSRSIIQQFREAEDAMSQLKGISGGRLNVAVISAGDYFFPRLLAEFMNRHE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCC
GVTLNLAVHNREELLHQLAGNLTDLAVMVRPPEGMDTINEAFAPHPYVIVAAPTHPLVGQ
CEEEEEEECCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHCCCCCEEEEECCCCCCCCC
RNIPLAELADEAFVSREKGSDTWNSMQEGFAGRLSNMRIAMEIKSTETIKQAVIANMGIA
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCHH
FLSAHTVGLELQAGKLAVLDIEGFPVMLNWYVVHRKNKRLPPVALAFKQFLMEEGAGLIE
HHHHHHEEEEEECCCEEEEEECCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHH
RITGVEGLISQNA
HHHHHHHHHCCCC
>Mature Secondary Structure
MRNATLRQLKVFETVARHMSFSRAAEELHLTQPAVSTQVRQLEHHVGLPLFEQLGKKIYL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHCCCEEEE
TPAGHEMLHYSRSIIQQFREAEDAMSQLKGISGGRLNVAVISAGDYFFPRLLAEFMNRHE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCC
GVTLNLAVHNREELLHQLAGNLTDLAVMVRPPEGMDTINEAFAPHPYVIVAAPTHPLVGQ
CEEEEEEECCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHCCCCCEEEEECCCCCCCCC
RNIPLAELADEAFVSREKGSDTWNSMQEGFAGRLSNMRIAMEIKSTETIKQAVIANMGIA
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCHH
FLSAHTVGLELQAGKLAVLDIEGFPVMLNWYVVHRKNKRLPPVALAFKQFLMEEGAGLIE
HHHHHHEEEEEECCCEEEEEECCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHH
RITGVEGLISQNA
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]