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The map label for this gene is badR [H]

Identifier: 116695636

GI number: 116695636

Start: 1927938

End: 1928471

Strand: Direct

Name: badR [H]

Synonym: H16_B1697

Alternate gene names: 116695636

Gene position: 1927938-1928471 (Clockwise)

Preceding gene: 116695631

Following gene: 116695637

Centisome position: 66.2

GC content: 63.11

Gene sequence:

>534_bases
GTGAAAAAGACTATGGTTAACCCGGACGTAGAAGTAGAACTCCCCACAAACGCGCGCATGGAACTGGCCAACCGGCTTTT
CTTCCGGCTATACCAATGCGCAAATATGTTGCATAAAACGGGATCACGAGCCGTCGAGGCAGAGGGCCTGACGACGCAGC
AGTGGGCCGTGCTCGGCGCGTTGTCGCGTCCGGAAGCCGCCGATGGCATGAGCGTGGGCGACCTGGCCCGCTACCTGATG
GTGAGCCGGCAAAACCTGTCAGGACTGGTCAGCCGGATGGAACGCGACGGCCACGTCACGCTGGCCCCGGACGGCCGCGA
CCGCCGCTCACGGCTGATACGGATGAGCGAACCGGGCCGGGAGGTCTGGCTGCACCAGGCGCAGCCGAAGATCCGGGCCT
ATTACGAGCAGGCGCTGACGGGGTTTTCTACCAATGACCTGACGCACACGCTGCATTACCTGCTCAAGTTGCTGGACAAC
ATGCGTGCGCTCGACACGCCCGACAGCGCAGACGGTGGCAGCCCAGGGGACTGA

Upstream 100 bases:

>100_bases
TATCGTGCCGGCCATGACGCCGTCACATCGCACCGCCAATTAGGTAAATATATTTACCTATAATAGGAGGCAGCCATTGC
CTGCGCAAGACGCCAACACT

Downstream 100 bases:

>100_bases
GTCGCACGCAGTATCGCAACTGAAACACACCGGCACACACCGGCCGGCTGGAACAGCCGAGCGCGCGTCCGCGATCCGCA
TCCTGGCCTGCCGCGCCGAC

Product: transcriptional regulator

Products: NA

Alternate protein names: Benzoate anaerobic degradation regulator [H]

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MKKTMVNPDVEVELPTNARMELANRLFFRLYQCANMLHKTGSRAVEAEGLTTQQWAVLGALSRPEAADGMSVGDLARYLM
VSRQNLSGLVSRMERDGHVTLAPDGRDRRSRLIRMSEPGREVWLHQAQPKIRAYYEQALTGFSTNDLTHTLHYLLKLLDN
MRALDTPDSADGGSPGD

Sequences:

>Translated_177_residues
MKKTMVNPDVEVELPTNARMELANRLFFRLYQCANMLHKTGSRAVEAEGLTTQQWAVLGALSRPEAADGMSVGDLARYLM
VSRQNLSGLVSRMERDGHVTLAPDGRDRRSRLIRMSEPGREVWLHQAQPKIRAYYEQALTGFSTNDLTHTLHYLLKLLDN
MRALDTPDSADGGSPGD
>Mature_177_residues
MKKTMVNPDVEVELPTNARMELANRLFFRLYQCANMLHKTGSRAVEAEGLTTQQWAVLGALSRPEAADGMSVGDLARYLM
VSRQNLSGLVSRMERDGHVTLAPDGRDRRSRLIRMSEPGREVWLHQAQPKIRAYYEQALTGFSTNDLTHTLHYLLKLLDN
MRALDTPDSADGGSPGD

Specific function: Transcriptional activator of genes for the anaerobic degradation of benzoate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 19828; Mature: 19828

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTMVNPDVEVELPTNARMELANRLFFRLYQCANMLHKTGSRAVEAEGLTTQQWAVLGA
CCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
LSRPEAADGMSVGDLARYLMVSRQNLSGLVSRMERDGHVTLAPDGRDRRSRLIRMSEPGR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHEECCCCCCH
EVWLHQAQPKIRAYYEQALTGFSTNDLTHTLHYLLKLLDNMRALDTPDSADGGSPGD
HHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKTMVNPDVEVELPTNARMELANRLFFRLYQCANMLHKTGSRAVEAEGLTTQQWAVLGA
CCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
LSRPEAADGMSVGDLARYLMVSRQNLSGLVSRMERDGHVTLAPDGRDRRSRLIRMSEPGR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHEECCCCCCH
EVWLHQAQPKIRAYYEQALTGFSTNDLTHTLHYLLKLLDNMRALDTPDSADGGSPGD
HHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9177244; 10094687 [H]