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The map label for this gene is pcl [H]

Identifier: 116695601

GI number: 116695601

Start: 1871569

End: 1873284

Strand: Direct

Name: pcl [H]

Synonym: H16_B1662

Alternate gene names: 116695601

Gene position: 1871569-1873284 (Clockwise)

Preceding gene: 116695600

Following gene: 116695602

Centisome position: 64.26

GC content: 72.38

Gene sequence:

>1716_bases
ATGACCATGCTCCCGATCGTCGCGCATGCCTCGCCCGAAGACATCATCGCCTGGGCGCACGGACGGCCTGTCAGCGTGCG
CCAGTTCCTGGCAGATGCGTCCAGCCTGGCCGATGCGCTGCCCGCAGGCGGGCACGTATTCAACGCCTGCACCGACCGCT
ACCGCTTCACCGTCGGCCTGTGCGCCGCGCTGCTGGCGGGCAAGGCCACCCTGCTGCCGCCATCGCATACGCCGGAGATG
GTGCGCCAGCTGGCCGACTTTGCCCCGGACGCCTTCTGCCTGCACGACCAGCCTGACGCGGCATTCGCCATGCCGGCGTT
CCACTATCACGACGGCCTGCGCGGCGCGGCCACGGACGGGCCGGTCGAGATCCCGCGGATTGCCGCGACCCAGGTCATGG
CGTACGTGTTCACGTCAGGCTCGACCGGCACGCCGGTGCCGCACCGCAAGACCTGGGGCGCGATGGCCCGGTGCGCGCAG
GCCGCGGCACAGCGGCTCGGCCTGCTGGACGGGCGTGCCTGGACCGTGGTGGGCACGGTGCCGCCGCAGCATATGTTCGG
GCTGGAGGCCACGGTCATGCTGGTGCTGCAGGGCCGCGCGGCCCTGGTGTCGGCCCCGGCCTTCTATCCTGCCGACGTGC
ACGATGCCCTCGCCTCGGTGCCGGCCTCGCGTGCGCTGGTCAGCTCGCCCGTGCACCTGCGCACGCTGGTGCAGTCGGGC
ATGGCAATGCCGCCGGCAGACCTGGTGCTGTGCGCGACCGCCCCGCTTGGCCGCCAGCTGGCGGGCGAGACCGAGACCCT
GTTCGGCGCTCCGCTGTGCGAGATCTACGGTAGCACCGAGACCGGCCAGATCGCCACGCGCCGCACCGCGCAGGCTGATG
CCTGGACACTGGTGCCGGGCGTGCGGCTGCAGGCACGCCAGGGCGCCGGCGGCGCCGAGACCTGGGCCGAAGGCGGCCAT
ATCGAGCAGCCGGTGCCGCTGGGCGACGCCATCGCGCCGCTGGATGCCGGCCACTTCCTGCTCCATGGCCGCAAGGCCGA
CATGCTGAATATCGCCGGCAAGCGCACCTCGCTGGCTTACCTGAACCACCAGCTCACGGCCATCGACGGCGTGCGCGACG
GCGCGTTCTTCATGCCCGATGATGCGCACGAAGGCGACACGCATGGCCACGTGGTGCGGCTGGTGGCCGTGGCAGTGGCG
CCAGGCGTCGCCCCGGCGCAGCTGCAGCAGGCGCTGCGCGCGCGCATCGACCCGGCCTTCCTGCCACGCCCGCTGCTCTT
TGCCGACAGCCTGCCGCGCAATGCGGCCGGCAAGCTGCCGCGCGAGGCCCTGGCGGCGCTGGTCGCAAGGCTTGCCGGGG
CGCACCACGGCGATAGCGCGGCAAGGCCCGGCTTTGTCATCGACGCCGATCACCCGGCCATCGCCGGCCACTTTCCCGGC
CATCCGATCGTGCCGGGGGTGGTACTGCTGGACCACGCGGTGCTGGCACTCGGCATTGCAATGGGCCGCCGCCTTGCCGT
CACCGAGGCCGGCACCATCAAGTTCCTGAGCCCGGTGACCCCGGGCGAGCGCGTTGAGATCCTCCACCAGGCCGACGCAG
CGGCCGATGGCGGCGTGAGTATCCGCTTCACGCTGCGCAGCGCCGGACGCGACGTCGCCAGCGGCACGCTGCAGGTGCGC
GGTGCCGCGACGCACGCGGGGGCATCGGCATGCTGA

Upstream 100 bases:

>100_bases
TATCGCGCAGTCATGGCTGCCCGTGCGGACCGGCCCGGTTTGCCGCGCTGACGCGCCGCAAACCGGCCCCTACACTGGCA
ACAGGCACAGGCTCAGCCCC

Downstream 100 bases:

>100_bases
GCTGGCTGTGGAGGCGGCAGCCGCCGCTGGAATCCGAATGGTCGCGCCGCCAGGAGCGCGGCAGCATCACGCTGCTGCGC
GTCATGACGTGGATCTCGCT

Product: Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase

Products: NA

Alternate protein names: 4CL; 4-coumaroyl-CoA synthase [H]

Number of amino acids: Translated: 571; Mature: 570

Protein sequence:

>571_residues
MTMLPIVAHASPEDIIAWAHGRPVSVRQFLADASSLADALPAGGHVFNACTDRYRFTVGLCAALLAGKATLLPPSHTPEM
VRQLADFAPDAFCLHDQPDAAFAMPAFHYHDGLRGAATDGPVEIPRIAATQVMAYVFTSGSTGTPVPHRKTWGAMARCAQ
AAAQRLGLLDGRAWTVVGTVPPQHMFGLEATVMLVLQGRAALVSAPAFYPADVHDALASVPASRALVSSPVHLRTLVQSG
MAMPPADLVLCATAPLGRQLAGETETLFGAPLCEIYGSTETGQIATRRTAQADAWTLVPGVRLQARQGAGGAETWAEGGH
IEQPVPLGDAIAPLDAGHFLLHGRKADMLNIAGKRTSLAYLNHQLTAIDGVRDGAFFMPDDAHEGDTHGHVVRLVAVAVA
PGVAPAQLQQALRARIDPAFLPRPLLFADSLPRNAAGKLPREALAALVARLAGAHHGDSAARPGFVIDADHPAIAGHFPG
HPIVPGVVLLDHAVLALGIAMGRRLAVTEAGTIKFLSPVTPGERVEILHQADAAADGGVSIRFTLRSAGRDVASGTLQVR
GAATHAGASAC

Sequences:

>Translated_571_residues
MTMLPIVAHASPEDIIAWAHGRPVSVRQFLADASSLADALPAGGHVFNACTDRYRFTVGLCAALLAGKATLLPPSHTPEM
VRQLADFAPDAFCLHDQPDAAFAMPAFHYHDGLRGAATDGPVEIPRIAATQVMAYVFTSGSTGTPVPHRKTWGAMARCAQ
AAAQRLGLLDGRAWTVVGTVPPQHMFGLEATVMLVLQGRAALVSAPAFYPADVHDALASVPASRALVSSPVHLRTLVQSG
MAMPPADLVLCATAPLGRQLAGETETLFGAPLCEIYGSTETGQIATRRTAQADAWTLVPGVRLQARQGAGGAETWAEGGH
IEQPVPLGDAIAPLDAGHFLLHGRKADMLNIAGKRTSLAYLNHQLTAIDGVRDGAFFMPDDAHEGDTHGHVVRLVAVAVA
PGVAPAQLQQALRARIDPAFLPRPLLFADSLPRNAAGKLPREALAALVARLAGAHHGDSAARPGFVIDADHPAIAGHFPG
HPIVPGVVLLDHAVLALGIAMGRRLAVTEAGTIKFLSPVTPGERVEILHQADAAADGGVSIRFTLRSAGRDVASGTLQVR
GAATHAGASAC
>Mature_570_residues
TMLPIVAHASPEDIIAWAHGRPVSVRQFLADASSLADALPAGGHVFNACTDRYRFTVGLCAALLAGKATLLPPSHTPEMV
RQLADFAPDAFCLHDQPDAAFAMPAFHYHDGLRGAATDGPVEIPRIAATQVMAYVFTSGSTGTPVPHRKTWGAMARCAQA
AAQRLGLLDGRAWTVVGTVPPQHMFGLEATVMLVLQGRAALVSAPAFYPADVHDALASVPASRALVSSPVHLRTLVQSGM
AMPPADLVLCATAPLGRQLAGETETLFGAPLCEIYGSTETGQIATRRTAQADAWTLVPGVRLQARQGAGGAETWAEGGHI
EQPVPLGDAIAPLDAGHFLLHGRKADMLNIAGKRTSLAYLNHQLTAIDGVRDGAFFMPDDAHEGDTHGHVVRLVAVAVAP
GVAPAQLQQALRARIDPAFLPRPLLFADSLPRNAAGKLPREALAALVARLAGAHHGDSAARPGFVIDADHPAIAGHFPGH
PIVPGVVLLDHAVLALGIAMGRRLAVTEAGTIKFLSPVTPGERVEILHQADAAADGGVSIRFTLRSAGRDVASGTLQVRG
AATHAGASAC

Specific function: Converts p-coumaric acid into p-coumaryl CoA. This is necessary for the activation of the photoactive yellow protein (PYP) chromophore [H]

COG id: COG0365

COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012743
- InterPro:   IPR020845
- InterPro:   IPR000873 [H]

Pfam domain/function: PF00501 AMP-binding [H]

EC number: =6.2.1.12 [H]

Molecular weight: Translated: 59399; Mature: 59267

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMLPIVAHASPEDIIAWAHGRPVSVRQFLADASSLADALPAGGHVFNACTDRYRFTVGL
CCCCCEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
CAALLAGKATLLPPSHTPEMVRQLADFAPDAFCLHDQPDAAFAMPAFHYHDGLRGAATDG
HHHHHCCCEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCEECCHHHHHCCCCCCCCCC
PVEIPRIAATQVMAYVFTSGSTGTPVPHRKTWGAMARCAQAAAQRLGLLDGRAWTVVGTV
CCCCCHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
PPQHMFGLEATVMLVLQGRAALVSAPAFYPADVHDALASVPASRALVSSPVHLRTLVQSG
CCHHHHCHHHEEEEEECCCHHEEECCCCCCCHHHHHHHHCCHHHHHHCCCHHHHHHHHCC
MAMPPADLVLCATAPLGRQLAGETETLFGAPLCEIYGSTETGQIATRRTAQADAWTLVPG
CCCCCCCEEEEECCCCCHHHCCCCHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCEEECCC
VRLQARQGAGGAETWAEGGHIEQPVPLGDAIAPLDAGHFLLHGRKADMLNIAGKRTSLAY
CEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCEEHH
LNHQLTAIDGVRDGAFFMPDDAHEGDTHGHVVRLVAVAVAPGVAPAQLQQALRARIDPAF
HCCEEEEECCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHH
LPRPLLFADSLPRNAAGKLPREALAALVARLAGAHHGDSAARPGFVIDADHPAIAGHFPG
CCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEECCCCC
HPIVPGVVLLDHAVLALGIAMGRRLAVTEAGTIKFLSPVTPGERVEILHQADAAADGGVS
CCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCCCHHHHHHHHHCCCCCCCEE
IRFTLRSAGRDVASGTLQVRGAATHAGASAC
EEEEECCCCCCHHCCEEEEEECCCCCCCCCC
>Mature Secondary Structure 
TMLPIVAHASPEDIIAWAHGRPVSVRQFLADASSLADALPAGGHVFNACTDRYRFTVGL
CCCCEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
CAALLAGKATLLPPSHTPEMVRQLADFAPDAFCLHDQPDAAFAMPAFHYHDGLRGAATDG
HHHHHCCCEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCEECCHHHHHCCCCCCCCCC
PVEIPRIAATQVMAYVFTSGSTGTPVPHRKTWGAMARCAQAAAQRLGLLDGRAWTVVGTV
CCCCCHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
PPQHMFGLEATVMLVLQGRAALVSAPAFYPADVHDALASVPASRALVSSPVHLRTLVQSG
CCHHHHCHHHEEEEEECCCHHEEECCCCCCCHHHHHHHHCCHHHHHHCCCHHHHHHHHCC
MAMPPADLVLCATAPLGRQLAGETETLFGAPLCEIYGSTETGQIATRRTAQADAWTLVPG
CCCCCCCEEEEECCCCCHHHCCCCHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCEEECCC
VRLQARQGAGGAETWAEGGHIEQPVPLGDAIAPLDAGHFLLHGRKADMLNIAGKRTSLAY
CEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCEEHH
LNHQLTAIDGVRDGAFFMPDDAHEGDTHGHVVRLVAVAVAPGVAPAQLQQALRARIDPAF
HCCEEEEECCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHH
LPRPLLFADSLPRNAAGKLPREALAALVARLAGAHHGDSAARPGFVIDADHPAIAGHFPG
CCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEECCCCC
HPIVPGVVLLDHAVLALGIAMGRRLAVTEAGTIKFLSPVTPGERVEILHQADAAADGGVS
CCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCCCHHHHHHHHHCCCCCCCEE
IRFTLRSAGRDVASGTLQVRGAATHAGASAC
EEEEECCCCCCHHCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA