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The map label for this gene is ydhJ [H]

Identifier: 116695407

GI number: 116695407

Start: 1643621

End: 1644454

Strand: Direct

Name: ydhJ [H]

Synonym: H16_B1465

Alternate gene names: 116695407

Gene position: 1643621-1644454 (Clockwise)

Preceding gene: 116695406

Following gene: 116695408

Centisome position: 56.43

GC content: 72.18

Gene sequence:

>834_bases
ATGATTCGCAAGCTTTCGCTGCTCGGCCCCGTTGCGGTGACCCTGGCGGCCGTGGTCGCCGCGGCGCTGACCGCCTGGCA
TTTGTGGCAGTACTACACCGAGGCGCCCTGGACCCGCGACGGCCATGTGCGCGCAGAAGTGATCCAGGTCGCGCCGGACG
TGTCCGGCCTGGTCACTGCCGTGCTCGTCGGCGACAACGCCCGGGTGCAACGCGGCCAGGTCCTGTTCGTGGTGGACCAG
GAGCGCTTCAGCCTGGCCCTGAAACAGGCCCAGGCCGAGGCCGCGTCGGCGCGCGCCGCGCTGGCACTGGGCCGGCGCCA
GGCGGCGAACGCGGCCGCCGTGGCCGCCGTGGCCGCCGCGCAGGCGCGCATCGACGAAGCCGATGCCGCGGTGGACGTGG
CCAGGCTCAACCTGGCCCGCTGCCGCGTGACCAGCCCGGTCGACGGCCATGCCAGCGACCGCCTGCCGCGCGTCGGCGAC
TTTGCCACCCGCGGCAGGCCGGCCCTGTCGGTGGTGGCCAGCGGCTCGCAGTACGTGGAAGGCTATTTCGAGGAAACCAA
GCTGCCCGCGATCCGCGTCGGCAGCGCCGCCGAAGTGCATATCATGGGCCAGCGCACTCCCTTGCGCGGACATGTGCAGA
GCATTGCGCCCGGCATCGAGGACCAGGACCGCGCCATCGGGCCCAACATGCTGCCCAGCGTCAACCCGACCTTCAACTGG
GTGCGCCTGGCCCAGCGCATACCGGTGCGAATCGCACTGGACCAGGTGCCCGCCGGGGTCCACCTGATCGCCGGCCAGAC
CGCGACGGTGCGCATCCGGGCGCCGCGCGAATGA

Upstream 100 bases:

>100_bases
TCGGCTTCTACCGCATCGTCTGGCACCGGTCCTTGTTCAATTTCTCGCTCTATATCCTTGTACTGGGCGCGCTCGTCGCG
CTCCTCTGGCAGGCCCCATC

Downstream 100 bases:

>100_bases
GGCGCCCCGACGCAGCCATACCGGCCCCGCCGGAACTGTTCTGCTTCCGCTCCTGCCGATTTGTACGCCTGCCGGGCGGC
GATCGGTCCCTACCATGGAG

Product: fusaric acid resistance efflux transporter,membrane fusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MIRKLSLLGPVAVTLAAVVAAALTAWHLWQYYTEAPWTRDGHVRAEVIQVAPDVSGLVTAVLVGDNARVQRGQVLFVVDQ
ERFSLALKQAQAEAASARAALALGRRQAANAAAVAAVAAAQARIDEADAAVDVARLNLARCRVTSPVDGHASDRLPRVGD
FATRGRPALSVVASGSQYVEGYFEETKLPAIRVGSAAEVHIMGQRTPLRGHVQSIAPGIEDQDRAIGPNMLPSVNPTFNW
VRLAQRIPVRIALDQVPAGVHLIAGQTATVRIRAPRE

Sequences:

>Translated_277_residues
MIRKLSLLGPVAVTLAAVVAAALTAWHLWQYYTEAPWTRDGHVRAEVIQVAPDVSGLVTAVLVGDNARVQRGQVLFVVDQ
ERFSLALKQAQAEAASARAALALGRRQAANAAAVAAVAAAQARIDEADAAVDVARLNLARCRVTSPVDGHASDRLPRVGD
FATRGRPALSVVASGSQYVEGYFEETKLPAIRVGSAAEVHIMGQRTPLRGHVQSIAPGIEDQDRAIGPNMLPSVNPTFNW
VRLAQRIPVRIALDQVPAGVHLIAGQTATVRIRAPRE
>Mature_277_residues
MIRKLSLLGPVAVTLAAVVAAALTAWHLWQYYTEAPWTRDGHVRAEVIQVAPDVSGLVTAVLVGDNARVQRGQVLFVVDQ
ERFSLALKQAQAEAASARAALALGRRQAANAAAVAAVAAAQARIDEADAAVDVARLNLARCRVTSPVDGHASDRLPRVGD
FATRGRPALSVVASGSQYVEGYFEETKLPAIRVGSAAEVHIMGQRTPLRGHVQSIAPGIEDQDRAIGPNMLPSVNPTFNW
VRLAQRIPVRIALDQVPAGVHLIAGQTATVRIRAPRE

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=273, Percent_Identity=39.1941391941392, Blast_Score=201, Evalue=3e-53,
Organism=Escherichia coli, GI1789637, Length=284, Percent_Identity=37.6760563380282, Blast_Score=187, Evalue=9e-49,
Organism=Escherichia coli, GI1790519, Length=146, Percent_Identity=34.2465753424658, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788711, Length=315, Percent_Identity=25.7142857142857, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1789041, Length=283, Percent_Identity=27.9151943462898, Blast_Score=74, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 29493; Mature: 29493

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRKLSLLGPVAVTLAAVVAAALTAWHLWQYYTEAPWTRDGHVRAEVIQVAPDVSGLVTA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHEEEE
VLVGDNARVQRGQVLFVVDQERFSLALKQAQAEAASARAALALGRRQAANAAAVAAVAAA
EEECCCCEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
QARIDEADAAVDVARLNLARCRVTSPVDGHASDRLPRVGDFATRGRPALSVVASGSQYVE
HHHCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHCCCCEEEEEECCHHHHH
GYFEETKLPAIRVGSAAEVHIMGQRTPLRGHVQSIAPGIEDQDRAIGPNMLPSVNPTFNW
HHHHHCCCCEEEECCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
VRLAQRIPVRIALDQVPAGVHLIAGQTATVRIRAPRE
HHHHHHCCEEEEEECCCCCEEEEECCEEEEEEECCCC
>Mature Secondary Structure
MIRKLSLLGPVAVTLAAVVAAALTAWHLWQYYTEAPWTRDGHVRAEVIQVAPDVSGLVTA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHEEEE
VLVGDNARVQRGQVLFVVDQERFSLALKQAQAEAASARAALALGRRQAANAAAVAAVAAA
EEECCCCEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
QARIDEADAAVDVARLNLARCRVTSPVDGHASDRLPRVGDFATRGRPALSVVASGSQYVE
HHHCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHCCCCEEEEEECCHHHHH
GYFEETKLPAIRVGSAAEVHIMGQRTPLRGHVQSIAPGIEDQDRAIGPNMLPSVNPTFNW
HHHHHCCCCEEEECCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
VRLAQRIPVRIALDQVPAGVHLIAGQTATVRIRAPRE
HHHHHHCCEEEEEECCCCCEEEEECCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]