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The map label for this gene is yddU [C]

Identifier: 116695197

GI number: 116695197

Start: 1411128

End: 1412975

Strand: Direct

Name: yddU [C]

Synonym: H16_B1253

Alternate gene names: 116695197

Gene position: 1411128-1412975 (Clockwise)

Preceding gene: 116695193

Following gene: 116695199

Centisome position: 48.45

GC content: 68.45

Gene sequence:

>1848_bases
ATGACAGGCCTGCCTGCCGCCACGCCTTTGCTCGACCGCGCACCTGTCGCATCTGGTACCCCCATCGCCGCAGCACTTGC
GCATGCGCGGCTGCCGCCGCTGCATGCGGTATTCCAGCCGATCGTGCAGGCGGACAATGCCGAGATCCTCGGCTACGAGG
CGCTGATCCGGGGGCCGGCGGGCTCGCCCTGGGCGAGCCCGGACGCGTTGTTCCGGCTGGCGCAGGGCGTTGCCGCGACC
ATGGCGCTGGAGATCCACGCGGCGCGCACTGCGCTGGCCGCCTGGCGCAGCCTGGACCTGCCCGGCAAGCTGTTCCTCAA
TTTCAGCCCCATGACGTTGCGGCACCTGCTGGCCGAGCGCGGGCGGCTGATGGCGGCGCTGCTGGAGGCCGGTATTGCGC
CGTCGCGCCTGGTGATCGAAATCACCGAACAGACCCCGATCGGCGATGCTGCCAGCTTTGCCCAGGCGATGGCGGTGCTG
CGCGAGCTTGGCATGCAGTACGCGCTGGATGATTTCGGCACCGGGCATGCCAACCTCGACCTGCTCGCGCACCTGTCGCC
GCAGTTCGTCAAGATCGACAAATCGCTGGTGCGGGGCATTGCGTCCTGTTCGCGGCGGCTGGAGATCCTGCGCGCGCTGC
TGCGCGTGATGAGCGCCTTTGGCGGGCGCGTGATCGCCGAAGGCGTCGAGGACGAAGACGAGCTCGCCGTGATCCGCGAC
CTGGGCGTGGCCGGCGCCCAGGGCTACTACGTGGGCCGGCCCTTGTTGCGGCCGGCCGCGCAGGCGCCGCAGCACGTGCA
CCAGGCGTTGGCTTCGCGGCATATCGCCGTGTTTCCGCAAATGGTGCGCTCAGGCTGGTCGGGCATCACCGCCGGGCGCC
TGCTGCGGCCTGCGCCGACGGTGTCGCCTGCCACCAGCAACGATGCGGTGCTGCGCGTCTTCCAGGACCAGCCCGACCTG
CAGGCCGTGGCCGTCGTCAATGACGAAGGCCGGCCGCTGGCGATCATCAGCCGCCAGGCTTTCATCGACCGCTACGCGGC
GCCATTCCATCGCGAGCTGTATGGCAAGAAGGCCTGCATCGCCATGGCCAACCGCGAGCCGGCCTGCTTTGACCATCGCG
CCAGCCTGGAGGAGATGGCGCAGATCCTGTCCGGCGAGAACACGCGCTCGCTTGCCGATGGTTTCGTGATTACCGAACAG
GGCCGCTATATCGGCCTGGGCACCGGCGCTGATCTGATCCGGGCCATCACCGAAGTGCGCATGGAGGCGGCGCGCTACGC
CAATCCGCTGACCTTCCTGCCCGGCAATATCCCGCTGAACCAGCATATCGAGCGCCTGATCGAAGCCGCCAGCGAGTTCC
GCGCCTGCTATGTCGACCTGAACCACTTCAAGCCCTTCAACGACAAATATGGCTACTGGAAGGGCGATGAAATGCTCAAG
GGCGCGGCCGCCATCCTGGCCGAGGCCTGTGATCCCGCACGCGATTTTCTCGGCCATGTGGGCGGCGACGACTTCCTGGT
GCTGTACCAGAGCAGCGACTGGGCCGCGCGCCTGCAAGCTGCGATCCGGCGCTTCAATGACGCGGCGCGCGCCATGTATT
CGCCCGCCGATCGCAACGCCGGCGGCATGCATGGCGAAGACCGCCACGGGCGGCCGGTCTTTTTTGCGCCAGTGTCGATG
GCGGTTGGCGTGGTGTGCGTGAGCGGCGAGGGCGTGGCGGGCCTGCAGCGGCTGGGCAGCCAGCATATCGGCGCCGCCGC
GGCGGCGGCCAAGCGCGAGGCCAAGCGCTCGGCAACCGGCATGGCCGTGCTGGATTTCCTGTCGCTGGCCGCGACGCTGT
CGGTCTAG

Upstream 100 bases:

>100_bases
ACGCCGGCGTGACATGGAATGAGGATTTTTGTCATCACGCTGTCATATCCATGTCATGCAATGTCGCTCGCCCTCTTGCC
CCATCCCCGGATTTCCCGCC

Downstream 100 bases:

>100_bases
CGGTCCGGCTGCCTGCGTCTGGTGAGCCGGCGGTCCGACGCGGGCAGCCTGGGCGTTGCGCCCCCTTCCAGTACGTCGAG
CCGGTAGCCGTGAGCGTAGA

Product: signal transduction protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 615; Mature: 614

Protein sequence:

>615_residues
MTGLPAATPLLDRAPVASGTPIAAALAHARLPPLHAVFQPIVQADNAEILGYEALIRGPAGSPWASPDALFRLAQGVAAT
MALEIHAARTALAAWRSLDLPGKLFLNFSPMTLRHLLAERGRLMAALLEAGIAPSRLVIEITEQTPIGDAASFAQAMAVL
RELGMQYALDDFGTGHANLDLLAHLSPQFVKIDKSLVRGIASCSRRLEILRALLRVMSAFGGRVIAEGVEDEDELAVIRD
LGVAGAQGYYVGRPLLRPAAQAPQHVHQALASRHIAVFPQMVRSGWSGITAGRLLRPAPTVSPATSNDAVLRVFQDQPDL
QAVAVVNDEGRPLAIISRQAFIDRYAAPFHRELYGKKACIAMANREPACFDHRASLEEMAQILSGENTRSLADGFVITEQ
GRYIGLGTGADLIRAITEVRMEAARYANPLTFLPGNIPLNQHIERLIEAASEFRACYVDLNHFKPFNDKYGYWKGDEMLK
GAAAILAEACDPARDFLGHVGGDDFLVLYQSSDWAARLQAAIRRFNDAARAMYSPADRNAGGMHGEDRHGRPVFFAPVSM
AVGVVCVSGEGVAGLQRLGSQHIGAAAAAAKREAKRSATGMAVLDFLSLAATLSV

Sequences:

>Translated_615_residues
MTGLPAATPLLDRAPVASGTPIAAALAHARLPPLHAVFQPIVQADNAEILGYEALIRGPAGSPWASPDALFRLAQGVAAT
MALEIHAARTALAAWRSLDLPGKLFLNFSPMTLRHLLAERGRLMAALLEAGIAPSRLVIEITEQTPIGDAASFAQAMAVL
RELGMQYALDDFGTGHANLDLLAHLSPQFVKIDKSLVRGIASCSRRLEILRALLRVMSAFGGRVIAEGVEDEDELAVIRD
LGVAGAQGYYVGRPLLRPAAQAPQHVHQALASRHIAVFPQMVRSGWSGITAGRLLRPAPTVSPATSNDAVLRVFQDQPDL
QAVAVVNDEGRPLAIISRQAFIDRYAAPFHRELYGKKACIAMANREPACFDHRASLEEMAQILSGENTRSLADGFVITEQ
GRYIGLGTGADLIRAITEVRMEAARYANPLTFLPGNIPLNQHIERLIEAASEFRACYVDLNHFKPFNDKYGYWKGDEMLK
GAAAILAEACDPARDFLGHVGGDDFLVLYQSSDWAARLQAAIRRFNDAARAMYSPADRNAGGMHGEDRHGRPVFFAPVSM
AVGVVCVSGEGVAGLQRLGSQHIGAAAAAAKREAKRSATGMAVLDFLSLAATLSV
>Mature_614_residues
TGLPAATPLLDRAPVASGTPIAAALAHARLPPLHAVFQPIVQADNAEILGYEALIRGPAGSPWASPDALFRLAQGVAATM
ALEIHAARTALAAWRSLDLPGKLFLNFSPMTLRHLLAERGRLMAALLEAGIAPSRLVIEITEQTPIGDAASFAQAMAVLR
ELGMQYALDDFGTGHANLDLLAHLSPQFVKIDKSLVRGIASCSRRLEILRALLRVMSAFGGRVIAEGVEDEDELAVIRDL
GVAGAQGYYVGRPLLRPAAQAPQHVHQALASRHIAVFPQMVRSGWSGITAGRLLRPAPTVSPATSNDAVLRVFQDQPDLQ
AVAVVNDEGRPLAIISRQAFIDRYAAPFHRELYGKKACIAMANREPACFDHRASLEEMAQILSGENTRSLADGFVITEQG
RYIGLGTGADLIRAITEVRMEAARYANPLTFLPGNIPLNQHIERLIEAASEFRACYVDLNHFKPFNDKYGYWKGDEMLKG
AAAILAEACDPARDFLGHVGGDDFLVLYQSSDWAARLQAAIRRFNDAARAMYSPADRNAGGMHGEDRHGRPVFFAPVSMA
VGVVCVSGEGVAGLQRLGSQHIGAAAAAAKREAKRSATGMAVLDFLSLAATLSV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=242, Percent_Identity=30.1652892561983, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787055, Length=250, Percent_Identity=30, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI87081845, Length=265, Percent_Identity=30.188679245283, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI87082096, Length=222, Percent_Identity=32.4324324324324, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1788502, Length=230, Percent_Identity=27.8260869565217, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI226510982, Length=228, Percent_Identity=31.140350877193, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87081743, Length=223, Percent_Identity=27.8026905829596, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787410, Length=215, Percent_Identity=27.906976744186, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788849, Length=194, Percent_Identity=28.3505154639175, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1790496, Length=222, Percent_Identity=24.7747747747748, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081980, Length=228, Percent_Identity=25.8771929824561, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1787541, Length=164, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786507, Length=120, Percent_Identity=31.6666666666667, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 65925; Mature: 65794

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGLPAATPLLDRAPVASGTPIAAALAHARLPPLHAVFQPIVQADNAEILGYEALIRGPA
CCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEHHHHEECCC
GSPWASPDALFRLAQGVAATMALEIHAARTALAAWRSLDLPGKLFLNFSPMTLRHLLAER
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH
GRLMAALLEAGIAPSRLVIEITEQTPIGDAASFAQAMAVLRELGMQYALDDFGTGHANLD
HHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHH
LLAHLSPQFVKIDKSLVRGIASCSRRLEILRALLRVMSAFGGRVIAEGVEDEDELAVIRD
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH
LGVAGAQGYYVGRPLLRPAAQAPQHVHQALASRHIAVFPQMVRSGWSGITAGRLLRPAPT
CCCCCCCCEECCCHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCC
VSPATSNDAVLRVFQDQPDLQAVAVVNDEGRPLAIISRQAFIDRYAAPFHRELYGKKACI
CCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEHHHHHHHHHCCHHHHHHHCCCCEE
AMANREPACFDHRASLEEMAQILSGENTRSLADGFVITEQGRYIGLGTGADLIRAITEVR
EECCCCCCCCCHHCCHHHHHHHHCCCCCHHHHCCEEEEECCCEEEECCCHHHHHHHHHHH
MEAARYANPLTFLPGNIPLNQHIERLIEAASEFRACYVDLNHFKPFNDKYGYWKGDEMLK
HHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHEEEEEHHHCCCCCCCCCCCCCHHHHH
GAAAILAEACDPARDFLGHVGGDDFLVLYQSSDWAARLQAAIRRFNDAARAMYSPADRNA
HHHHHHHHHCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
GGMHGEDRHGRPVFFAPVSMAVGVVCVSGEGVAGLQRLGSQHIGAAAAAAKREAKRSATG
CCCCCCCCCCCEEEEECHHHHHEEEEECCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
MAVLDFLSLAATLSV
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
TGLPAATPLLDRAPVASGTPIAAALAHARLPPLHAVFQPIVQADNAEILGYEALIRGPA
CCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEHHHHEECCC
GSPWASPDALFRLAQGVAATMALEIHAARTALAAWRSLDLPGKLFLNFSPMTLRHLLAER
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH
GRLMAALLEAGIAPSRLVIEITEQTPIGDAASFAQAMAVLRELGMQYALDDFGTGHANLD
HHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHH
LLAHLSPQFVKIDKSLVRGIASCSRRLEILRALLRVMSAFGGRVIAEGVEDEDELAVIRD
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH
LGVAGAQGYYVGRPLLRPAAQAPQHVHQALASRHIAVFPQMVRSGWSGITAGRLLRPAPT
CCCCCCCCEECCCHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCC
VSPATSNDAVLRVFQDQPDLQAVAVVNDEGRPLAIISRQAFIDRYAAPFHRELYGKKACI
CCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEHHHHHHHHHCCHHHHHHHCCCCEE
AMANREPACFDHRASLEEMAQILSGENTRSLADGFVITEQGRYIGLGTGADLIRAITEVR
EECCCCCCCCCHHCCHHHHHHHHCCCCCHHHHCCEEEEECCCEEEECCCHHHHHHHHHHH
MEAARYANPLTFLPGNIPLNQHIERLIEAASEFRACYVDLNHFKPFNDKYGYWKGDEMLK
HHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHEEEEEHHHCCCCCCCCCCCCCHHHHH
GAAAILAEACDPARDFLGHVGGDDFLVLYQSSDWAARLQAAIRRFNDAARAMYSPADRNA
HHHHHHHHHCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
GGMHGEDRHGRPVFFAPVSMAVGVVCVSGEGVAGLQRLGSQHIGAAAAAAKREAKRSATG
CCCCCCCCCCCEEEEECHHHHHEEEEECCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
MAVLDFLSLAATLSV
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]