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The map label for this gene is yvoA [H]

Identifier: 116694874

GI number: 116694874

Start: 1051435

End: 1052172

Strand: Direct

Name: yvoA [H]

Synonym: H16_B0929

Alternate gene names: 116694874

Gene position: 1051435-1052172 (Clockwise)

Preceding gene: 116694868

Following gene: 116694875

Centisome position: 36.1

GC content: 65.58

Gene sequence:

>738_bases
GTGAACACCGCCAATCTCGTGACAACAAGCTCCCTGCCTCGCTTCAAGCAGATCGAAGGCGCGCTGCGCCAGCGCATCGT
CAACAACGAATGGACTCCGGGCATCAAGCTGCCGTCTGAGTCTGAGCTGATGGCTGAATTCGGCGTCAGCCGCATCACCG
TGCGCCAGTCGCTGGCATCGCTGCTTGCCGAAGGGCTGATCGAGACGGTGCACGGCAAGGGCAGCTTTGTCAGCCGTCCG
GCGGGGCAGGCGGACCTGGGGCCGTTGACTGGCTTTTTCGACTACATGCGCGCGCGCGGGCACGAAGCGCACGGCAAGCT
GCTGTCGACGCGGCTGATCGCGGCGCCGGCCATCGCCACCGATGCGCTGCGCCTGCCGCCGGGAACCAGGCTGCTGTGCG
TGACCATGCTCAAGTCAGTGGCCGGCGTGCCGGTGGCGGTCGGCATGACGATGGCGCCCGAACCGCTGATGCGCGCGATT
CTGGAGCACGACCTGGAAAACCACGATGCCCTGATGATCGTGGAGGCCCGCCTGGGTTATCGCCTCAAGTACCTGCACAC
GGAGAGCGCAGCAATCCCTGCCAATGCCGAAACCGCGCGCCGGCTCAAGGTGGCGCCGGGCGAGCCGCTGCTGCGCATCC
GGTTCACGCCGCACGACATCGACGAGAAGCCGCTGGCCTTCTCCGAATTCATGTTTCGTGGCGACAAGTTCACCTACAAA
GCCTGCGTGCGGCGCTAG

Upstream 100 bases:

>100_bases
CGCCGCGAATCTTGTCATTGGTGTGTCCGAGCATGTTGTCATGACATGTTATGATGAGTCAATGTTGTTATGATAAGTAG
AAGCCCGCATCGGACATGCC

Downstream 100 bases:

>100_bases
CGTCGCCTGGCAGTGGCGCCGGGGGAACTTTTGTGCCGGTGCCGTGGCCTGAACGGCATCGGCGCTGGCGTTAGAATGTG
GCGCCCAGTTCTGCCCCAGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MNTANLVTTSSLPRFKQIEGALRQRIVNNEWTPGIKLPSESELMAEFGVSRITVRQSLASLLAEGLIETVHGKGSFVSRP
AGQADLGPLTGFFDYMRARGHEAHGKLLSTRLIAAPAIATDALRLPPGTRLLCVTMLKSVAGVPVAVGMTMAPEPLMRAI
LEHDLENHDALMIVEARLGYRLKYLHTESAAIPANAETARRLKVAPGEPLLRIRFTPHDIDEKPLAFSEFMFRGDKFTYK
ACVRR

Sequences:

>Translated_245_residues
MNTANLVTTSSLPRFKQIEGALRQRIVNNEWTPGIKLPSESELMAEFGVSRITVRQSLASLLAEGLIETVHGKGSFVSRP
AGQADLGPLTGFFDYMRARGHEAHGKLLSTRLIAAPAIATDALRLPPGTRLLCVTMLKSVAGVPVAVGMTMAPEPLMRAI
LEHDLENHDALMIVEARLGYRLKYLHTESAAIPANAETARRLKVAPGEPLLRIRFTPHDIDEKPLAFSEFMFRGDKFTYK
ACVRR
>Mature_245_residues
MNTANLVTTSSLPRFKQIEGALRQRIVNNEWTPGIKLPSESELMAEFGVSRITVRQSLASLLAEGLIETVHGKGSFVSRP
AGQADLGPLTGFFDYMRARGHEAHGKLLSTRLIAAPAIATDALRLPPGTRLLCVTMLKSVAGVPVAVGMTMAPEPLMRAI
LEHDLENHDALMIVEARLGYRLKYLHTESAAIPANAETARRLKVAPGEPLLRIRFTPHDIDEKPLAFSEFMFRGDKFTYK
ACVRR

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=235, Percent_Identity=27.2340425531915, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI87082252, Length=224, Percent_Identity=25.4464285714286, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790118, Length=220, Percent_Identity=27.2727272727273, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26955; Mature: 26955

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTANLVTTSSLPRFKQIEGALRQRIVNNEWTPGIKLPSESELMAEFGVSRITVRQSLAS
CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHH
LLAEGLIETVHGKGSFVSRPAGQADLGPLTGFFDYMRARGHEAHGKLLSTRLIAAPAIAT
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH
DALRLPPGTRLLCVTMLKSVAGVPVAVGMTMAPEPLMRAILEHDLENHDALMIVEARLGY
CCEECCCCCHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCE
RLKYLHTESAAIPANAETARRLKVAPGEPLLRIRFTPHDIDEKPLAFSEFMFRGDKFTYK
EEEEEECCCCCCCCCCHHHHEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCHHH
ACVRR
HHHCC
>Mature Secondary Structure
MNTANLVTTSSLPRFKQIEGALRQRIVNNEWTPGIKLPSESELMAEFGVSRITVRQSLAS
CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHH
LLAEGLIETVHGKGSFVSRPAGQADLGPLTGFFDYMRARGHEAHGKLLSTRLIAAPAIAT
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH
DALRLPPGTRLLCVTMLKSVAGVPVAVGMTMAPEPLMRAILEHDLENHDALMIVEARLGY
CCEECCCCCHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCE
RLKYLHTESAAIPANAETARRLKVAPGEPLLRIRFTPHDIDEKPLAFSEFMFRGDKFTYK
EEEEEECCCCCCCCCCHHHHEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCHHH
ACVRR
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]