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The map label for this gene is yciC [H]

Identifier: 116694815

GI number: 116694815

Start: 985796

End: 986746

Strand: Direct

Name: yciC [H]

Synonym: H16_B0869

Alternate gene names: 116694815

Gene position: 985796-986746 (Clockwise)

Preceding gene: 116694814

Following gene: 116694817

Centisome position: 33.85

GC content: 69.61

Gene sequence:

>951_bases
ATGAACGCGCGGGCTCCGGTCCCGCTGGTGGTGGTCGGCGGGTACCTTGGCGCCGGCAAGACCACCTTGCTCAACCGCCT
GCTGGCCAACGCGCAGGGGCGCCGCATCGCGGTGCTGGTCAACGATTTCGGCGAGATCAATATCGATGCCGCGCTGATCC
GCACGCGCAGCGACGACGTGATCCAGCTGGAGAACGGCTGCATCTGCTGCTCGATTGGCGGCCGGCTGGCCGAGGCGCTG
GTGGCCATCGCAGCGCGGGAGCAGCGGCCGGACTTGCTGGTGATCGAGGCCAGCGGCGTCTCGGACCCGCAGCGCATTGC
TCAGGTCGGCTTGCTGGATCGGGCCTTTGTGCTCAATGCCGTGGCGGTGGCCGTGGACGTGACCGAGGTCGGCCACAACC
TGCACGATCCGCTGGTGGGCGACATGGTGCGGCAACAGATCGCGGGGGCCTCGGTAGTGGTGCTGACCAAGGCAGATCTT
GCCGATGCGGATGCGCTGGCAATGGCTGCCGCCACGGTCGACGCCATCGCGCCGCATGCCGCGGTGCTGACCGCATGCGA
GGGCGAGGTGCCCTTGTCGGTCTTTGTCGACGCCGCCCCGCCGGAACCACATGCCGATGCCGTGCTGCAGGCGGGCGGGC
ACTGGCGGCGAGCCGTCGGCACCGTGCCCGCCGGCATCCGCAGCATTTCATACCAGACCGGCCGCGACTTCGACAAGGCG
CTGCTGCGGCAGGCGCTGAAGGCGCTGCCGGTGCGGCTGCTGCGCGCGAAGGGCATGGTCAGGCTGGCAGCCGATCCGCG
CCTGCACGAACTGCATGTGGTCGCGGGCCGCATGCGGCTGAGTCCGATGGCGCAAGGCGATGCGGCAGGGTCTGCAATGG
TCCTGATCGGTGCCTTCGGTGCGGAGGAGGAGAGGCGTATCCGCGCCTGCCTCGATCGGGCGCTCGCCTGA

Upstream 100 bases:

>100_bases
TGCTGGAAGATGACCCGACCGAGGTGGCTCCAGAGCGCCTGAAGGATGTGCGTGTCTGGGGCACGGTGCTGGGCGGGCGC
GTGTTCGCGGCGCCGGCACG

Downstream 100 bases:

>100_bases
GCGGGCGCGCGAACGGCGTCGCTGCGGCGCCGCTCAGGTGTGGAATTCTTCCGGTTCCGCATGCGCCGGCCTTCCTTCCC
AGCCGCCACGCTCGAACTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MNARAPVPLVVVGGYLGAGKTTLLNRLLANAQGRRIAVLVNDFGEINIDAALIRTRSDDVIQLENGCICCSIGGRLAEAL
VAIAAREQRPDLLVIEASGVSDPQRIAQVGLLDRAFVLNAVAVAVDVTEVGHNLHDPLVGDMVRQQIAGASVVVLTKADL
ADADALAMAAATVDAIAPHAAVLTACEGEVPLSVFVDAAPPEPHADAVLQAGGHWRRAVGTVPAGIRSISYQTGRDFDKA
LLRQALKALPVRLLRAKGMVRLAADPRLHELHVVAGRMRLSPMAQGDAAGSAMVLIGAFGAEEERRIRACLDRALA

Sequences:

>Translated_316_residues
MNARAPVPLVVVGGYLGAGKTTLLNRLLANAQGRRIAVLVNDFGEINIDAALIRTRSDDVIQLENGCICCSIGGRLAEAL
VAIAAREQRPDLLVIEASGVSDPQRIAQVGLLDRAFVLNAVAVAVDVTEVGHNLHDPLVGDMVRQQIAGASVVVLTKADL
ADADALAMAAATVDAIAPHAAVLTACEGEVPLSVFVDAAPPEPHADAVLQAGGHWRRAVGTVPAGIRSISYQTGRDFDKA
LLRQALKALPVRLLRAKGMVRLAADPRLHELHVVAGRMRLSPMAQGDAAGSAMVLIGAFGAEEERRIRACLDRALA
>Mature_316_residues
MNARAPVPLVVVGGYLGAGKTTLLNRLLANAQGRRIAVLVNDFGEINIDAALIRTRSDDVIQLENGCICCSIGGRLAEAL
VAIAAREQRPDLLVIEASGVSDPQRIAQVGLLDRAFVLNAVAVAVDVTEVGHNLHDPLVGDMVRQQIAGASVVVLTKADL
ADADALAMAAATVDAIAPHAAVLTACEGEVPLSVFVDAAPPEPHADAVLQAGGHWRRAVGTVPAGIRSISYQTGRDFDKA
LLRQALKALPVRLLRAKGMVRLAADPRLHELHVVAGRMRLSPMAQGDAAGSAMVLIGAFGAEEERRIRACLDRALA

Specific function: May bind GTP. Might act as metal chaperone (Potential). Contributes to optimal growth under starvation for zinc [H]

COG id: COG0523

COG function: function code R; Putative GTPases (G3E family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cobW C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI33469141, Length=206, Percent_Identity=28.1553398058252, Blast_Score=95, Evalue=8e-20,
Organism=Homo sapiens, GI126722884, Length=206, Percent_Identity=27.6699029126214, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI223941779, Length=185, Percent_Identity=28.1081081081081, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI148727351, Length=206, Percent_Identity=27.1844660194175, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI146231952, Length=206, Percent_Identity=27.1844660194175, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI223941776, Length=194, Percent_Identity=26.8041237113402, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI119120938, Length=114, Percent_Identity=31.5789473684211, Blast_Score=77, Evalue=2e-14,
Organism=Escherichia coli, GI87082430, Length=327, Percent_Identity=30.8868501529052, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788499, Length=166, Percent_Identity=28.3132530120482, Blast_Score=69, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6324356, Length=132, Percent_Identity=31.8181818181818, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR011629 [H]

Pfam domain/function: PF02492 cobW; PF07683 CobW_C [H]

EC number: NA

Molecular weight: Translated: 33079; Mature: 33079

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNARAPVPLVVVGGYLGAGKTTLLNRLLANAQGRRIAVLVNDFGEINIDAALIRTRSDDV
CCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEEEECCCCE
IQLENGCICCSIGGRLAEALVAIAAREQRPDLLVIEASGVSDPQRIAQVGLLDRAFVLNA
EEECCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
VAVAVDVTEVGHNLHDPLVGDMVRQQIAGASVVVLTKADLADADALAMAAATVDAIAPHA
HHHEEEHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHH
AVLTACEGEVPLSVFVDAAPPEPHADAVLQAGGHWRRAVGTVPAGIRSISYQTGRDFDKA
HEEEECCCCCCEEEEEECCCCCCCHHHHHHCCCCHHHHHCCCCHHHHHCCCCCCCCHHHH
LLRQALKALPVRLLRAKGMVRLAADPRLHELHVVAGRMRLSPMAQGDAAGSAMVLIGAFG
HHHHHHHHHHHHHHHHCCEEEEECCCCCEEHHEEHHHHCCCCCCCCCCCCCEEEEEEECC
AEEERRIRACLDRALA
CCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNARAPVPLVVVGGYLGAGKTTLLNRLLANAQGRRIAVLVNDFGEINIDAALIRTRSDDV
CCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEEEECCCCE
IQLENGCICCSIGGRLAEALVAIAAREQRPDLLVIEASGVSDPQRIAQVGLLDRAFVLNA
EEECCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
VAVAVDVTEVGHNLHDPLVGDMVRQQIAGASVVVLTKADLADADALAMAAATVDAIAPHA
HHHEEEHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHH
AVLTACEGEVPLSVFVDAAPPEPHADAVLQAGGHWRRAVGTVPAGIRSISYQTGRDFDKA
HEEEECCCCCCEEEEEECCCCCCCHHHHHHCCCCHHHHHCCCCHHHHHCCCCCCCCHHHH
LLRQALKALPVRLLRAKGMVRLAADPRLHELHVVAGRMRLSPMAQGDAAGSAMVLIGAFG
HHHHHHHHHHHHHHHHCCEEEEECCCCCEEHHEEHHHHCCCCCCCCCCCCCEEEEEEECC
AEEERRIRACLDRALA
CCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377; 9811636 [H]