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The map label for this gene is sdsB [H]

Identifier: 116694558

GI number: 116694558

Start: 678783

End: 679682

Strand: Direct

Name: sdsB [H]

Synonym: H16_B0607

Alternate gene names: 116694558

Gene position: 678783-679682 (Clockwise)

Preceding gene: 116694555

Following gene: 116694560

Centisome position: 23.31

GC content: 68.44

Gene sequence:

>900_bases
ATGAACCTGATTCAGCTCAAGCACCTGATCGCGCTGGCGGAGACCGGCTCGTTCAGCCAGGCTGCCGCGCGGCTGCATCT
GACGCAGCCGGCACTCAGCCGCAGCATCCAGGCCCTGGAAGCGGAGCTGGGCATGCCACTGGTAGACCGCATCGGCAAGC
GCAACGAACTGACGCCGTTCGGGCAGCTGGCGCTGGAAAGGGCACGGCGCATCGTCTTCGAGGCTGGCGAGCTCAGGCAG
AGCGCGCTGGCGTTGCAGGCCGGCCAGGCGGGCACGCTGCGCATCGGCCTGGGATCCGGGCCGGGCGCTATGCTGATGAC
GCCGCTGCTGGTGCATATGGCCAGGCACCATCCCAGGGTCAGGCTGACCATTTCGCGCGGCGCGACCAATCTGCAGCTTC
AGCAGCTACGCGCCCGCGCGCTTGACGGCGTGGTCATCGATCTGCGCTCGCTAGTGCCGGGCCCCGACCTGCGCGTGGAG
CGGCTGCCGGACCTGCGCGCCGGCTTCATGTGCCGCAGCGGCCATCCGTTGTGCAAGCTGCGCCGCGTGAGCTTCGACGA
TCTGCTGGCCTATCCGATCGCTTCCAGCCCCCTGTCGGACGAGGTGGCGCGCATCCTGATCGCCCACTTCGGGCCACGCG
CGCATCCCGACCAGATGGTCACGCTGCGCTGCGAGGAGATCTCCAGCCTGGTGGAAGCCGCCCGCATCACCGATGCGGTG
TTCCTCGGCATCATCGCCGCCGCGCGCGAGCCCATGGCAAGCGGGGAACTGGTGGAGCTGGCATTGACGCCGCCCTTGCA
CACCAGCGCGCAGTTCGCGCTGATCACCTTGCAGGGACGGACCGAGACGCCCGCAATGGAGATGCTGCGGGCATTCATGG
CGGAGAGGATGCGGGAGTAG

Upstream 100 bases:

>100_bases
GCGGGACGCACGGCTGGCAGCCATGTTAGGAAGGCGGCAACCTGATGTCCAATGCATCATTTTTCTCATTATCATTACAA
GATTGCATGCGAGGACGGCG

Downstream 100 bases:

>100_bases
CGGCGCTCCCGCCCGCGCGTACAGGCAATGACTGCTCAGCGCAGGCCAGCCTGCCGTTGCGCATTCAGCGCTTCCGCGCG
CGCCTTGACGTCCCGTGCCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MNLIQLKHLIALAETGSFSQAAARLHLTQPALSRSIQALEAELGMPLVDRIGKRNELTPFGQLALERARRIVFEAGELRQ
SALALQAGQAGTLRIGLGSGPGAMLMTPLLVHMARHHPRVRLTISRGATNLQLQQLRARALDGVVIDLRSLVPGPDLRVE
RLPDLRAGFMCRSGHPLCKLRRVSFDDLLAYPIASSPLSDEVARILIAHFGPRAHPDQMVTLRCEEISSLVEAARITDAV
FLGIIAAAREPMASGELVELALTPPLHTSAQFALITLQGRTETPAMEMLRAFMAERMRE

Sequences:

>Translated_299_residues
MNLIQLKHLIALAETGSFSQAAARLHLTQPALSRSIQALEAELGMPLVDRIGKRNELTPFGQLALERARRIVFEAGELRQ
SALALQAGQAGTLRIGLGSGPGAMLMTPLLVHMARHHPRVRLTISRGATNLQLQQLRARALDGVVIDLRSLVPGPDLRVE
RLPDLRAGFMCRSGHPLCKLRRVSFDDLLAYPIASSPLSDEVARILIAHFGPRAHPDQMVTLRCEEISSLVEAARITDAV
FLGIIAAAREPMASGELVELALTPPLHTSAQFALITLQGRTETPAMEMLRAFMAERMRE
>Mature_299_residues
MNLIQLKHLIALAETGSFSQAAARLHLTQPALSRSIQALEAELGMPLVDRIGKRNELTPFGQLALERARRIVFEAGELRQ
SALALQAGQAGTLRIGLGSGPGAMLMTPLLVHMARHHPRVRLTISRGATNLQLQQLRARALDGVVIDLRSLVPGPDLRVE
RLPDLRAGFMCRSGHPLCKLRRVSFDDLLAYPIASSPLSDEVARILIAHFGPRAHPDQMVTLRCEEISSLVEAARITDAV
FLGIIAAAREPMASGELVELALTPPLHTSAQFALITLQGRTETPAMEMLRAFMAERMRE

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=170, Percent_Identity=31.1764705882353, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790399, Length=148, Percent_Identity=32.4324324324324, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI157672245, Length=278, Percent_Identity=26.978417266187, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787601, Length=190, Percent_Identity=30, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790262, Length=205, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787879, Length=143, Percent_Identity=34.965034965035, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI145693105, Length=195, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI2367136, Length=144, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788297, Length=158, Percent_Identity=30.379746835443, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32665; Mature: 32665

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLIQLKHLIALAETGSFSQAAARLHLTQPALSRSIQALEAELGMPLVDRIGKRNELTPF
CCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHH
GQLALERARRIVFEAGELRQSALALQAGQAGTLRIGLGSGPGAMLMTPLLVHMARHHPRV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEE
RLTISRGATNLQLQQLRARALDGVVIDLRSLVPGPDLRVERLPDLRAGFMCRSGHPLCKL
EEEEECCCCCHHHHHHHHHHHCCCEEEHHHHCCCCCCCHHCCCCCHHCCEECCCCCHHHH
RRVSFDDLLAYPIASSPLSDEVARILIAHFGPRAHPDQMVTLRCEEISSLVEAARITDAV
HHCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH
FLGIIAAAREPMASGELVELALTPPLHTSAQFALITLQGRTETPAMEMLRAFMAERMRE
HHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLIQLKHLIALAETGSFSQAAARLHLTQPALSRSIQALEAELGMPLVDRIGKRNELTPF
CCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHH
GQLALERARRIVFEAGELRQSALALQAGQAGTLRIGLGSGPGAMLMTPLLVHMARHHPRV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEE
RLTISRGATNLQLQQLRARALDGVVIDLRSLVPGPDLRVERLPDLRAGFMCRSGHPLCKL
EEEEECCCCCHHHHHHHHHHHCCCEEEHHHHCCCCCCCHHCCCCCHHCCEECCCCCHHHH
RRVSFDDLLAYPIASSPLSDEVARILIAHFGPRAHPDQMVTLRCEEISSLVEAARITDAV
HHCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH
FLGIIAAAREPMASGELVELALTPPLHTSAQFALITLQGRTETPAMEMLRAFMAERMRE
HHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]