| Definition | Ralstonia eutropha H16 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008314 |
| Length | 2,912,490 |
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The map label for this gene is pfeA [H]
Identifier: 116694460
GI number: 116694460
Start: 573556
End: 575883
Strand: Direct
Name: pfeA [H]
Synonym: H16_B0509
Alternate gene names: 116694460
Gene position: 573556-575883 (Clockwise)
Preceding gene: 116694458
Following gene: 116694461
Centisome position: 19.69
GC content: 64.86
Gene sequence:
>2328_bases ATGCTGCGCTCAGGTGGAGTGAGTCGAAAAAGACGACAACAAGGTTTTCCAGTGAAGAAGAATCGCATTGCACTGGCCGT TTCGGCGGTGCTGATGGGCCCCGCCGTCGCCGCCGCCCAGGTGGTGGACGCGCCCGAGCCGCTGCAGGAGGTGGTGGTCT CGGCCAAGTCGGAGCGCGCCGAGACGCCGGCCATACCGCCCAACACGCCCTCGCCGGCCTACGGCATCAGCCGCCGCCGC ATGGCCGACTTCAATGTGGTGAACACGGAAGACGCCCTCAAGTACGCGCCCAACCTCGCCGTACGCAAGCGCTTCATCGG CGATATGAATTCGATCATCTCGGTGCGCAGCACCAGTTCGCGCCAGTCGGCGCGGGGGCTGGTCTATGCGGACGGCCTGC TGCTGTCCAACCTGCTGGGATCGGACTTCAGCTTCCCGCCGCGCTGGTCGCTGGTCAACAGCGCCGAGATCGAGCGCATG GATGTGCTGTACGGCCCGTATTCGGCGCTGTATCCCGGCAACTCGCTGGGCGCGACGGTGCTGATCACCACGCGCACGCC GGAGAAGTTCGAGGGCGATGCCAGCGTGCAGCTGTTCACGCAGCGCTTCAGCCTGTATGGCACGCACGACAACTTCAACG GGGTCCACGCCAACGCCTATGTGGGCGACCGCGTCGGCCCGTTCTCGTGGCTGGTCAGCGTGGACCGGCAGGACAGCAAG AGCCAGCCGCTGAGTTTCTATACCGCGGCGCGTTCCACGGCCCGTGCCACTTCCGCCGACAAGCCGGTCACCGGCGCGCA CTTCGACCAGGACCAGACCGGCCGCGAGCGCGTGGTGATGGGCGTGAACAGCGAGGGCGTCACGCATACCGTGCAGGACC AGCTCAAGCTCAAGCTCGGCTACGACATCACCAATACCCTGCAGGCGCAGTTCACCGCGGCCTACTGGCAGCAGGACCGC TCCAGTGCCACCGGCAGCTACCTGCGCGATGCCGATGGCAATGTTGTGTCGAGCGGTCCCGTGAATATCGGCGGTTATCG CTATGTGATTCCCGCCAACGCCTTCGCCCCGAGCAATGGCGAGGACGCGCGCTGGCTCTATGGCCTGTCGCTGCGTACGC GCAATGAGACCGGCTGGAATTTCTCGGGCGTGGCGTCGCTGTTCGATGTCAGCAAGGACATCAGCCGCAGCGCCAACACC GTCGGCAGCGGGCCGGGCACGGTGACCTATGGCGACGGCACCGGCTGGCGCACGCTCGACCTGAAGGCCGACTACCGGCC GCGGCAGCTGCAGGGCGGGCACTGGGTCACGTTCGGCTACCACTATGACAATTACCGGCTGAGCAACACCACCTACAACA CCTCGGACTGGCAGGCGGCCACCATCAGCGCCTTCAACAACGCCTTTGCCGGCAAGACCGAGACCCAGGCGCTGTATGCG CAAGACGCCTGGTACTTTGCCGAGGACTGGAAGCTGATCCCCGGCGTGCGCTACGAACACTGGCGCGCCTATGACGGCAG CCGCAGCCAGCCCGGCGTGGATATCGGCTACCCGGTGCGCAGCGAATCCAACTGGTCGCCCAAGCTGGCGCTGGAGAAGG CATTCGGGCAGGACTGGCTGGGCCGGTTGTCGCTGGGCCAGGCCTATCGCTATCCGACTGTCAGCGAGCTGTTCCAGGGC CGCATCACCGGGACCGCGTTGATCAACAACGATCCCAACCTGCAGCCCGAGCGGTCGTTCTCGAAGGACCTGACCTTCGA GCGCACGCTGGATTCGTCGTACTTCCGGGTCTCGGTGTATGAGGACGATATCCGCGATGCCCTGGTCAGCCAGACCAACA CCACGGTATTCCCGACTGTCACCAGCTTTCAGAACGTCGACCGCGTGCGCACCCGCGGCATCGAGCTGGCCTATGACGCG CGCGATGTGTTCGTCAGCGGCTTCGACCTGTCGGCCAGCGGGGCCTACAACCATTCGAAGACGCTTGAGAACGCCAACAA CCCGGCCTCGGTGGGCAAGTACTTCTACCGCATCCCCAAGTGGCGGGCCAACCTGATGGGCACCTATCGCATCACGCCGG CCTGGGCCGGCACGCTGGCCATGACCTATTCGGGGCGGCAGTACAATACGCTCGACAATTCCGACGTCAACCCCGACACC TTCGGCGGCACCAGCAGCTTCCTGACCTTTGACGTCAAGCTGACGTACCGGCCCGCGAAGAACGTGCGCCTCGGGCTTGG CATCGACAACCTCACCGACCAGCGCTACTACGTCTATCACCCGTATCCGGGCCGGACGTTCTACGCCGAGGCGAAACTCT CCTTCTGA
Upstream 100 bases:
>100_bases TAACGCTTAGGCAGCCTGCCGCCCGCGTCGCTATGTCGCATCGGCCTGCGCCCCCGTGCCCCATAAAATGTCAGCGCTCG CTCTCGGGGAGAGGCGCCGT
Downstream 100 bases:
>100_bases GCACGTGAACAGGCTGACCACAACCATGCAAGGCGTTCGCCCCGGTTTCCGCTTGATCGTTGCCGGGCTGATGATGGCCG GTGCCGCGCTGGCCGCGACC
Product: outer membrane receptor, TonB dependent
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 775; Mature: 775
Protein sequence:
>775_residues MLRSGGVSRKRRQQGFPVKKNRIALAVSAVLMGPAVAAAQVVDAPEPLQEVVVSAKSERAETPAIPPNTPSPAYGISRRR MADFNVVNTEDALKYAPNLAVRKRFIGDMNSIISVRSTSSRQSARGLVYADGLLLSNLLGSDFSFPPRWSLVNSAEIERM DVLYGPYSALYPGNSLGATVLITTRTPEKFEGDASVQLFTQRFSLYGTHDNFNGVHANAYVGDRVGPFSWLVSVDRQDSK SQPLSFYTAARSTARATSADKPVTGAHFDQDQTGRERVVMGVNSEGVTHTVQDQLKLKLGYDITNTLQAQFTAAYWQQDR SSATGSYLRDADGNVVSSGPVNIGGYRYVIPANAFAPSNGEDARWLYGLSLRTRNETGWNFSGVASLFDVSKDISRSANT VGSGPGTVTYGDGTGWRTLDLKADYRPRQLQGGHWVTFGYHYDNYRLSNTTYNTSDWQAATISAFNNAFAGKTETQALYA QDAWYFAEDWKLIPGVRYEHWRAYDGSRSQPGVDIGYPVRSESNWSPKLALEKAFGQDWLGRLSLGQAYRYPTVSELFQG RITGTALINNDPNLQPERSFSKDLTFERTLDSSYFRVSVYEDDIRDALVSQTNTTVFPTVTSFQNVDRVRTRGIELAYDA RDVFVSGFDLSASGAYNHSKTLENANNPASVGKYFYRIPKWRANLMGTYRITPAWAGTLAMTYSGRQYNTLDNSDVNPDT FGGTSSFLTFDVKLTYRPAKNVRLGLGIDNLTDQRYYVYHPYPGRTFYAEAKLSF
Sequences:
>Translated_775_residues MLRSGGVSRKRRQQGFPVKKNRIALAVSAVLMGPAVAAAQVVDAPEPLQEVVVSAKSERAETPAIPPNTPSPAYGISRRR MADFNVVNTEDALKYAPNLAVRKRFIGDMNSIISVRSTSSRQSARGLVYADGLLLSNLLGSDFSFPPRWSLVNSAEIERM DVLYGPYSALYPGNSLGATVLITTRTPEKFEGDASVQLFTQRFSLYGTHDNFNGVHANAYVGDRVGPFSWLVSVDRQDSK SQPLSFYTAARSTARATSADKPVTGAHFDQDQTGRERVVMGVNSEGVTHTVQDQLKLKLGYDITNTLQAQFTAAYWQQDR SSATGSYLRDADGNVVSSGPVNIGGYRYVIPANAFAPSNGEDARWLYGLSLRTRNETGWNFSGVASLFDVSKDISRSANT VGSGPGTVTYGDGTGWRTLDLKADYRPRQLQGGHWVTFGYHYDNYRLSNTTYNTSDWQAATISAFNNAFAGKTETQALYA QDAWYFAEDWKLIPGVRYEHWRAYDGSRSQPGVDIGYPVRSESNWSPKLALEKAFGQDWLGRLSLGQAYRYPTVSELFQG RITGTALINNDPNLQPERSFSKDLTFERTLDSSYFRVSVYEDDIRDALVSQTNTTVFPTVTSFQNVDRVRTRGIELAYDA RDVFVSGFDLSASGAYNHSKTLENANNPASVGKYFYRIPKWRANLMGTYRITPAWAGTLAMTYSGRQYNTLDNSDVNPDT FGGTSSFLTFDVKLTYRPAKNVRLGLGIDNLTDQRYYVYHPYPGRTFYAEAKLSF >Mature_775_residues MLRSGGVSRKRRQQGFPVKKNRIALAVSAVLMGPAVAAAQVVDAPEPLQEVVVSAKSERAETPAIPPNTPSPAYGISRRR MADFNVVNTEDALKYAPNLAVRKRFIGDMNSIISVRSTSSRQSARGLVYADGLLLSNLLGSDFSFPPRWSLVNSAEIERM DVLYGPYSALYPGNSLGATVLITTRTPEKFEGDASVQLFTQRFSLYGTHDNFNGVHANAYVGDRVGPFSWLVSVDRQDSK SQPLSFYTAARSTARATSADKPVTGAHFDQDQTGRERVVMGVNSEGVTHTVQDQLKLKLGYDITNTLQAQFTAAYWQQDR SSATGSYLRDADGNVVSSGPVNIGGYRYVIPANAFAPSNGEDARWLYGLSLRTRNETGWNFSGVASLFDVSKDISRSANT VGSGPGTVTYGDGTGWRTLDLKADYRPRQLQGGHWVTFGYHYDNYRLSNTTYNTSDWQAATISAFNNAFAGKTETQALYA QDAWYFAEDWKLIPGVRYEHWRAYDGSRSQPGVDIGYPVRSESNWSPKLALEKAFGQDWLGRLSLGQAYRYPTVSELFQG RITGTALINNDPNLQPERSFSKDLTFERTLDSSYFRVSVYEDDIRDALVSQTNTTVFPTVTSFQNVDRVRTRGIELAYDA RDVFVSGFDLSASGAYNHSKTLENANNPASVGKYFYRIPKWRANLMGTYRITPAWAGTLAMTYSGRQYNTLDNSDVNPDT FGGTSSFLTFDVKLTYRPAKNVRLGLGIDNLTDQRYYVYHPYPGRTFYAEAKLSF
Specific function: Specific receptor for the siderophore ferric enterobactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 86009; Mature: 86009
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRSGGVSRKRRQQGFPVKKNRIALAVSAVLMGPAVAAAQVVDAPEPLQEVVVSAKSERA CCCCCCCCHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCC ETPAIPPNTPSPAYGISRRRMADFNVVNTEDALKYAPNLAVRKRFIGDMNSIISVRSTSS CCCCCCCCCCCCCCCCCCCEECCCEEECCHHHHHHCCCHHHHHHHHCCHHHHEEEECCCC RQSARGLVYADGLLLSNLLGSDFSFPPRWSLVNSAEIERMDVLYGPYSALYPGNSLGATV HHHHCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCHHCCCCCCCCEEE LITTRTPEKFEGDASVQLFTQRFSLYGTHDNFNGVHANAYVGDRVGPFSWLVSVDRQDSK EEEECCCHHCCCCCCEEEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCCC SQPLSFYTAARSTARATSADKPVTGAHFDQDQTGRERVVMGVNSEGVTHTVQDQLKLKLG CCCEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCEEEEEC YDITNTLQAQFTAAYWQQDRSSATGSYLRDADGNVVSSGPVNIGGYRYVIPANAFAPSNG CCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCEEECCCCCCCCEEEEEECCCCCCCCC EDARWLYGLSLRTRNETGWNFSGVASLFDVSKDISRSANTVGSGPGTVTYGDGTGWRTLD CCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEE LKADYRPRQLQGGHWVTFGYHYDNYRLSNTTYNTSDWQAATISAFNNAFAGKTETQALYA EECCCCCCCCCCCEEEEEEEEECCEEECCCCCCCCCCCEEEHHHHHCCCCCCCCCEEEEE QDAWYFAEDWKLIPGVRYEHWRAYDGSRSQPGVDIGYPVRSESNWSPKLALEKAFGQDWL CCCEEEECCCEECCCCCCCCEECCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHCHHHH GRLSLGQAYRYPTVSELFQGRITGTALINNDPNLQPERSFSKDLTFERTLDSSYFRVSVY HHHCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCHHHCCCEEEECCCCEEEEEEE EDDIRDALVSQTNTTVFPTVTSFQNVDRVRTRGIELAYDARDVFVSGFDLSASGAYNHSK HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCEEEEEECCEEEEECCCCCCCCCCCCHH TLENANNPASVGKYFYRIPKWRANLMGTYRITPAWAGTLAMTYSGRQYNTLDNSDVNPDT HHCCCCCCHHHHHHHHHCCCHHHCCEEEEEECCCCCCEEEEEECCCEECCCCCCCCCCCC FGGTSSFLTFDVKLTYRPAKNVRLGLGIDNLTDQRYYVYHPYPGRTFYAEAKLSF CCCCCCEEEEEEEEEECCCCCCEEECCCCCCCCCEEEEEECCCCCEEEEEEEECC >Mature Secondary Structure MLRSGGVSRKRRQQGFPVKKNRIALAVSAVLMGPAVAAAQVVDAPEPLQEVVVSAKSERA CCCCCCCCHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCC ETPAIPPNTPSPAYGISRRRMADFNVVNTEDALKYAPNLAVRKRFIGDMNSIISVRSTSS CCCCCCCCCCCCCCCCCCCEECCCEEECCHHHHHHCCCHHHHHHHHCCHHHHEEEECCCC RQSARGLVYADGLLLSNLLGSDFSFPPRWSLVNSAEIERMDVLYGPYSALYPGNSLGATV HHHHCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCHHCCCCCCCCEEE LITTRTPEKFEGDASVQLFTQRFSLYGTHDNFNGVHANAYVGDRVGPFSWLVSVDRQDSK EEEECCCHHCCCCCCEEEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCCC SQPLSFYTAARSTARATSADKPVTGAHFDQDQTGRERVVMGVNSEGVTHTVQDQLKLKLG CCCEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCEEEEEC YDITNTLQAQFTAAYWQQDRSSATGSYLRDADGNVVSSGPVNIGGYRYVIPANAFAPSNG CCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCEEECCCCCCCCEEEEEECCCCCCCCC EDARWLYGLSLRTRNETGWNFSGVASLFDVSKDISRSANTVGSGPGTVTYGDGTGWRTLD CCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEE LKADYRPRQLQGGHWVTFGYHYDNYRLSNTTYNTSDWQAATISAFNNAFAGKTETQALYA EECCCCCCCCCCCEEEEEEEEECCEEECCCCCCCCCCCEEEHHHHHCCCCCCCCCEEEEE QDAWYFAEDWKLIPGVRYEHWRAYDGSRSQPGVDIGYPVRSESNWSPKLALEKAFGQDWL CCCEEEECCCEECCCCCCCCEECCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHCHHHH GRLSLGQAYRYPTVSELFQGRITGTALINNDPNLQPERSFSKDLTFERTLDSSYFRVSVY HHHCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCHHHCCCEEEECCCCEEEEEEE EDDIRDALVSQTNTTVFPTVTSFQNVDRVRTRGIELAYDARDVFVSGFDLSASGAYNHSK HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCEEEEEECCEEEEECCCCCCCCCCCCHH TLENANNPASVGKYFYRIPKWRANLMGTYRITPAWAGTLAMTYSGRQYNTLDNSDVNPDT HHCCCCCCHHHHHHHHHCCCHHHCCEEEEEECCCCCCEEEEEECCCEECCCCCCCCCCCC FGGTSSFLTFDVKLTYRPAKNVRLGLGIDNLTDQRYYVYHPYPGRTFYAEAKLSF CCCCCCEEEEEEEEEECCCCCCEEECCCCCCCCCEEEEEECCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8419284; 10984043 [H]