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The map label for this gene is pecT [H]

Identifier: 116694009

GI number: 116694009

Start: 57324

End: 58226

Strand: Direct

Name: pecT [H]

Synonym: H16_B0049

Alternate gene names: 116694009

Gene position: 57324-58226 (Clockwise)

Preceding gene: 116694006

Following gene: 116694010

Centisome position: 1.97

GC content: 73.53

Gene sequence:

>903_bases
ATGCAGGACCCTCGCCTCGATCCCGTACTGCTGCAGAGCTTTGTCGCCGTGGCGGAAAGCGGCAGTTTTACCCGCGCCGC
GCAGCGCGTGCACCTGACTCAGTCAACGGTCAGCCAGCAGGTGCGCCGGCTGGAAGACCAGCTCGGCTGCGTGCTGCTGG
ACCGCGGCGGCCGCTATGTCACCACCACGCCCGAGGGCGAGCGCCTGCTGGGCTACGCGCGCCGCCTGCAGCAGCTGATG
GCCGAGGCGGTGGGGCAGCTGCGCCAGAGCGCCGGCCAGGGCGAGATCCGCATCGGCGTGCCCGAGGACTTTGCCGCGCG
GCCGCTGACGCCGGTGCTGGCCGGGTTTGCCGATGACTGGCCTGGCATGCGGCTGGAGGTGACCAGTGGCATGAGCCATG
AGCTGTGGCAGCGCTTCCAGGACCGGGAACTGGACCTGGTGCTGGTCAAGCAGCGGGTCGGGCAGGCGCCGGGGCTGGCC
AGCTGGCCCGAGCCGCTGTGCTGGATCGACAGCCGCAGCCGTCCGGCGGTGGCGCGCGACCCGGTGCCGCTGGTGGCGTT
TCCGGTGGGCGGGCTGTACCGCGGCGAGATGACGCACGCGCTCGACGCCGGCGGACGGCGCTGGCGTGTGGCCTTTGTCA
GTGCCAGCCTGGCCAGCATCCTGGCCGCGGTGGCCGACGGCCTGGGCGTCACCCTGCTGCCGCGGCGCCTGGCCACGGCT
CAGCACCAGGTGCTGGAGGACGGCGGCTGGCCCGCCGCGGTGCCCGACGTCGAGCTCAGCCTGCACGCGCAGCCGGACCT
GCCGGCCGCGGCGCGCGACATGGCCGCGCGGCTGGCCGCGCTATGCGAGACCGTGATGGGGTCGGGCGCGCCGCCCGCGG
ATCAGCCGAAGAACTCGTTGTAG

Upstream 100 bases:

>100_bases
ACGCGGGCCGGGGCAGCGTGCAACTGTACGCCGGGGCTTGGTAATTGGGAAATTAAATGATGAAATCGCCGGCAGTGGAG
AAACTAATGGATAACCGGCC

Downstream 100 bases:

>100_bases
TAGCGGGTGCAGGTGCCGGCCGGGCGGAAGGTGTATGGCAGCTCGGCCATTGCCGCGGCTTCCAGCGAGCCGAACGGGAT
GTCGGGCGCGGCCAGGGGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MQDPRLDPVLLQSFVAVAESGSFTRAAQRVHLTQSTVSQQVRRLEDQLGCVLLDRGGRYVTTTPEGERLLGYARRLQQLM
AEAVGQLRQSAGQGEIRIGVPEDFAARPLTPVLAGFADDWPGMRLEVTSGMSHELWQRFQDRELDLVLVKQRVGQAPGLA
SWPEPLCWIDSRSRPAVARDPVPLVAFPVGGLYRGEMTHALDAGGRRWRVAFVSASLASILAAVADGLGVTLLPRRLATA
QHQVLEDGGWPAAVPDVELSLHAQPDLPAAARDMAARLAALCETVMGSGAPPADQPKNSL

Sequences:

>Translated_300_residues
MQDPRLDPVLLQSFVAVAESGSFTRAAQRVHLTQSTVSQQVRRLEDQLGCVLLDRGGRYVTTTPEGERLLGYARRLQQLM
AEAVGQLRQSAGQGEIRIGVPEDFAARPLTPVLAGFADDWPGMRLEVTSGMSHELWQRFQDRELDLVLVKQRVGQAPGLA
SWPEPLCWIDSRSRPAVARDPVPLVAFPVGGLYRGEMTHALDAGGRRWRVAFVSASLASILAAVADGLGVTLLPRRLATA
QHQVLEDGGWPAAVPDVELSLHAQPDLPAAARDMAARLAALCETVMGSGAPPADQPKNSL
>Mature_300_residues
MQDPRLDPVLLQSFVAVAESGSFTRAAQRVHLTQSTVSQQVRRLEDQLGCVLLDRGGRYVTTTPEGERLLGYARRLQQLM
AEAVGQLRQSAGQGEIRIGVPEDFAARPLTPVLAGFADDWPGMRLEVTSGMSHELWQRFQDRELDLVLVKQRVGQAPGLA
SWPEPLCWIDSRSRPAVARDPVPLVAFPVGGLYRGEMTHALDAGGRRWRVAFVSASLASILAAVADGLGVTLLPRRLATA
QHQVLEDGGWPAAVPDVELSLHAQPDLPAAARDMAARLAALCETVMGSGAPPADQPKNSL

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=263, Percent_Identity=33.0798479087452, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI157672245, Length=245, Percent_Identity=29.3877551020408, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1790399, Length=238, Percent_Identity=28.1512605042017, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787806, Length=257, Percent_Identity=26.4591439688716, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787589, Length=241, Percent_Identity=31.9502074688797, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI145693193, Length=121, Percent_Identity=38.8429752066116, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787879, Length=253, Percent_Identity=28.8537549407115, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788297, Length=250, Percent_Identity=28.4, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994962, Length=149, Percent_Identity=30.2013422818792, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786401, Length=143, Percent_Identity=34.965034965035, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790262, Length=139, Percent_Identity=32.3741007194245, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789173, Length=170, Percent_Identity=30.5882352941176, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786713, Length=134, Percent_Identity=29.1044776119403, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788481, Length=242, Percent_Identity=26.8595041322314, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790208, Length=140, Percent_Identity=30.7142857142857, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788887, Length=239, Percent_Identity=27.6150627615063, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786448, Length=243, Percent_Identity=27.1604938271605, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788296, Length=234, Percent_Identity=25.2136752136752, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32398; Mature: 32398

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDPRLDPVLLQSFVAVAESGSFTRAAQRVHLTQSTVSQQVRRLEDQLGCVLLDRGGRYV
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCEEE
TTTPEGERLLGYARRLQQLMAEAVGQLRQSAGQGEIRIGVPEDFAARPLTPVLAGFADDW
EECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCC
PGMRLEVTSGMSHELWQRFQDRELDLVLVKQRVGQAPGLASWPEPLCWIDSRSRPAVARD
CCCEEEECCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCC
PVPLVAFPVGGLYRGEMTHALDAGGRRWRVAFVSASLASILAAVADGLGVTLLPRRLATA
CCCEEEECCCCCCCCCHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHH
QHQVLEDGGWPAAVPDVELSLHAQPDLPAAARDMAARLAALCETVMGSGAPPADQPKNSL
HHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MQDPRLDPVLLQSFVAVAESGSFTRAAQRVHLTQSTVSQQVRRLEDQLGCVLLDRGGRYV
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCEEE
TTTPEGERLLGYARRLQQLMAEAVGQLRQSAGQGEIRIGVPEDFAARPLTPVLAGFADDW
EECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCC
PGMRLEVTSGMSHELWQRFQDRELDLVLVKQRVGQAPGLASWPEPLCWIDSRSRPAVARD
CCCEEEECCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCC
PVPLVAFPVGGLYRGEMTHALDAGGRRWRVAFVSASLASILAAVADGLGVTLLPRRLATA
CCCEEEECCCCCCCCCHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHH
QHQVLEDGGWPAAVPDVELSLHAQPDLPAAARDMAARLAALCETVMGSGAPPADQPKNSL
HHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]