| Definition | Ralstonia eutropha H16 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008314 |
| Length | 2,912,490 |
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The map label for this gene is 116693976
Identifier: 116693976
GI number: 116693976
Start: 17145
End: 19712
Strand: Direct
Name: 116693976
Synonym: H16_B0016
Alternate gene names: NA
Gene position: 17145-19712 (Clockwise)
Preceding gene: 116693975
Following gene: 116693978
Centisome position: 0.59
GC content: 64.95
Gene sequence:
>2568_bases ATGAAGTCGCAAACTTATCCTGACACAAGCATTCTTGCGTCCGGTCAGCAAGCACTCCCCGGCGGCCGCCCGGGCGTTGC CATCGGCAGTACCGCGCTCGGCGGCGAGTGGACATGGGTGCAGACACCCGCCGGCGCGGCCGAAAGCCCCGCTGCATTGG ATCCTGCCGCAGGCTGGCTGCCGGCCCCAGTGCCCGGCACGGTGGCCAGCGCGCTGCGCGCCGCCGGGCGATGGGACGAC GCAATGCCGCCGCCATTGCACCAGTATGACCATTGGTATCGTGTGAACTTTGCCGGCCGCGGCCGGCGCGTGCTGCGCTT TAACGGGCTCGCCACGGTGGTCGAAGCCTGGCTGAACGGAAAGCTTGTGCTGAGCGCGCGGCATATGTTTGTCGCTCATG AAGTCGAGGTCGACCTGGACGGCGACAACCTGATGCACCTCTGCTTCCGTGCGCTCCATCCGTGGTTGCGCAAGCAGCGC GGCCCGGTGCGGTGGAAGCCAAGAATGATCGTGCCACCAATCCTGCGGGCGATTCGCACGACCCTGCTTGGCCACATGCC GGGCTGGTGCCCGCCGGTCCATGCGGTTGGGCCCTGGCGGCCGGTGGAACTGCTTGACCCGGCCAGTGACGACATCCTGC ATGGCGTGCGCGCTGATCTGTGGGGGCGGGTGCAAGGAGATCGCGGTGTGATTGGCCTGCACCTGCACTTCCCGGCATCC GCGCCAGCGTCTGGATCGTTCGAGGCCATCGACGGCGAGGGATGCATCTATCCGGGCTCGCTGTCGCGTACCGACAGGTT CACACTCGAAGGCACAGTCTGCGTTGAACGTCCAAAGCTCTGGTGGCCGCATACGCACGGTGAACCCCACCTCTACCGTG TGGATGCAACCATCGAGGGACGCGCCATCCACTGCGGACGGGTTGGCTTTCGCACCATATCATTGGATTGTTCAAGCGAT GCCGGGGCCTTCGCACTGCGCATCAACGGAGAGCCGCTGTTCTGCCGGGGGGCGTGCATCTCCAGCAATGATCTGCACGG CCTTGCCGACACGGATGAAGCATCCCGGCACTGGCTGGAGCTGGCGCGCCGGGGCGGGATGAACATGGTGCGGATCAGCG GCGTCACGTGCTATCCGGGCGCGGCCTTCTACCGGATATGTGACGAACTTGGCTTGCTGGTCTGGCACGATTTCATGTTC GCCAATTTTGATTATGGCAGCATCGGACCGGGCCTCGGCCTCACCGAGGACATCACGCGCGAAGTTGGCGACTGGCTAAG CGCCACCCTAACCCATCCGAGCATTGCCGTGCTGTGTGGCGGCAGCGAGGCAGAGCAGCAGGCGGCAATGATGGGCGTCT CGCGCAGCGACTGGAAGCAGCCACTGTTCGACGAACTGATCCGGGGCTTGGTTGCCGCCAAGCGGCCGGACGTAGTGTAT GTCGGCAATTCGCCAACTGGCGGCGCGTGGCCGTTCCAGCCGGACACTGGTGTGAGTCATTACTACGGCGTTGGAGCCTA CCAGCGACCGTTGGCGGATGCGCGCTTGGCGCAAGTGCGCTTTGCTTCCGAATGTCTGGCATTTGCCAATGTGCCCTGCG AGCGCACGCTGGCGGAACACGGTTTGTCGCAGCCGCTGCATTCGCCCCGCTGGAAAGCCACAATACCCCGCGACGCGGGC GCACCGTGGGATTTCGAGGATGTACGTGAGTACTACCTGCGAACCTTGTACGAAGTGGATCCACCGCGCCTACGATATGA GCAGCCGCAGCGTTACCTGGTGCTGTCCCGTGCGGTGGTCGCGGAGGTGATGACAGAAGTCTTCAGCGAATGGCGCCGGG TCGGGTCAAGCTGTGCCGGCGGACTGATCTGGCAATTGCAGGATCTCGTGCCCGGAGCCGGCTGGGGCATCGTCGATGCG TGCGGGCGGCCAAAGTCGGCCTGGCATGCCCTGCGGCAGGTCTGGCAACCGCTGCAGGTATTGATTACCGATGAAGGGCT CAACGGACTGCACGTGCATGCGATCAACGAAACGCCGCAACCGCACGCGCTGTCGCTGACGCTGCGCTGCCTGCGCGACG GCGAGACAGTTGTGGCCGAAGCCCGGCACAGCCTGTTATTGCCGGCGCGTGGCGCGGCGCGCATTGAAGCAGCGGCGCTG CTGGACCGCTTCTTCGACTTCACCTATGCGTATCGCTTCGGCCCGCCGACGCACGATGTGGTCGTGGTCACGCTGCATGC TGCCGACAGCGGCGAGCCGCTGAGCCAGGCCGTCTACCTTCCTGACCGCCGTGCCGCCGCGCTGAAGCCCCCCGGGTTGC GAGCCAGGCTCGAGCAAGTCGACGGTGACTGGTGGCTGACGGTATCCGCGCAGCGCTTCGCACGTTGGGTTCACATCGAC GATCATGCCTTTCAAGCGACCGATAACTGGTTCCATCTCGCGCCCGGCAGCAGCCGGCGTCTGCGGTTGGTGCATGAGGC GGGGAAGGCTGGCGCGCACGCTCCCGCGATTCCTTCCGGCGAGATCCACGCGGTCAATGCGGAGCATCCACTTGGCTATG ATGGCTGA
Upstream 100 bases:
>100_bases TCCGCCCTGCATCGAACTTCTGCAGCCGCCCGGAGCAGCGAGGCATGCTCCGCGTGGCCAGCGTTCCAGCACGGGCAGGC TGTCACGGGAGAGGCAGTCC
Downstream 100 bases:
>100_bases CCGCCGAGCCGGGCGCCGTTGCTGTTGCGGCGCTCATGCCCCGGGATGCCCGCCGTAGAACATGGCGGGCACCCCCGGCC CTATGCGCAGACTTGGTGGG
Product: putative beta-mannosidase
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Beta-Mannosidase Protein; Glycoside Hydrolase; Mannosidase; Glycosidase; Glycoside Hydrolase Family 2 TIM Barrel; Beta-Galactosidase/Beta-Glucuronidase; Beta-Glucuronidase; Exported Glycosyl Hydrolase; Glycoside Hydrolase Family 2 Protein; O-Glycosyl Hydrolase; Family 2 Glycosyl Hydrolase; Mannosylglycoprotein Endo-Beta-Mannosidase; Beta-Mannosidase-Related Protein; Beta-Mannosidase Man2A; BETA-Mannosidase Protein
Number of amino acids: Translated: 855; Mature: 855
Protein sequence:
>855_residues MKSQTYPDTSILASGQQALPGGRPGVAIGSTALGGEWTWVQTPAGAAESPAALDPAAGWLPAPVPGTVASALRAAGRWDD AMPPPLHQYDHWYRVNFAGRGRRVLRFNGLATVVEAWLNGKLVLSARHMFVAHEVEVDLDGDNLMHLCFRALHPWLRKQR GPVRWKPRMIVPPILRAIRTTLLGHMPGWCPPVHAVGPWRPVELLDPASDDILHGVRADLWGRVQGDRGVIGLHLHFPAS APASGSFEAIDGEGCIYPGSLSRTDRFTLEGTVCVERPKLWWPHTHGEPHLYRVDATIEGRAIHCGRVGFRTISLDCSSD AGAFALRINGEPLFCRGACISSNDLHGLADTDEASRHWLELARRGGMNMVRISGVTCYPGAAFYRICDELGLLVWHDFMF ANFDYGSIGPGLGLTEDITREVGDWLSATLTHPSIAVLCGGSEAEQQAAMMGVSRSDWKQPLFDELIRGLVAAKRPDVVY VGNSPTGGAWPFQPDTGVSHYYGVGAYQRPLADARLAQVRFASECLAFANVPCERTLAEHGLSQPLHSPRWKATIPRDAG APWDFEDVREYYLRTLYEVDPPRLRYEQPQRYLVLSRAVVAEVMTEVFSEWRRVGSSCAGGLIWQLQDLVPGAGWGIVDA CGRPKSAWHALRQVWQPLQVLITDEGLNGLHVHAINETPQPHALSLTLRCLRDGETVVAEARHSLLLPARGAARIEAAAL LDRFFDFTYAYRFGPPTHDVVVVTLHAADSGEPLSQAVYLPDRRAAALKPPGLRARLEQVDGDWWLTVSAQRFARWVHID DHAFQATDNWFHLAPGSSRRLRLVHEAGKAGAHAPAIPSGEIHAVNAEHPLGYDG
Sequences:
>Translated_855_residues MKSQTYPDTSILASGQQALPGGRPGVAIGSTALGGEWTWVQTPAGAAESPAALDPAAGWLPAPVPGTVASALRAAGRWDD AMPPPLHQYDHWYRVNFAGRGRRVLRFNGLATVVEAWLNGKLVLSARHMFVAHEVEVDLDGDNLMHLCFRALHPWLRKQR GPVRWKPRMIVPPILRAIRTTLLGHMPGWCPPVHAVGPWRPVELLDPASDDILHGVRADLWGRVQGDRGVIGLHLHFPAS APASGSFEAIDGEGCIYPGSLSRTDRFTLEGTVCVERPKLWWPHTHGEPHLYRVDATIEGRAIHCGRVGFRTISLDCSSD AGAFALRINGEPLFCRGACISSNDLHGLADTDEASRHWLELARRGGMNMVRISGVTCYPGAAFYRICDELGLLVWHDFMF ANFDYGSIGPGLGLTEDITREVGDWLSATLTHPSIAVLCGGSEAEQQAAMMGVSRSDWKQPLFDELIRGLVAAKRPDVVY VGNSPTGGAWPFQPDTGVSHYYGVGAYQRPLADARLAQVRFASECLAFANVPCERTLAEHGLSQPLHSPRWKATIPRDAG APWDFEDVREYYLRTLYEVDPPRLRYEQPQRYLVLSRAVVAEVMTEVFSEWRRVGSSCAGGLIWQLQDLVPGAGWGIVDA CGRPKSAWHALRQVWQPLQVLITDEGLNGLHVHAINETPQPHALSLTLRCLRDGETVVAEARHSLLLPARGAARIEAAAL LDRFFDFTYAYRFGPPTHDVVVVTLHAADSGEPLSQAVYLPDRRAAALKPPGLRARLEQVDGDWWLTVSAQRFARWVHID DHAFQATDNWFHLAPGSSRRLRLVHEAGKAGAHAPAIPSGEIHAVNAEHPLGYDG >Mature_855_residues MKSQTYPDTSILASGQQALPGGRPGVAIGSTALGGEWTWVQTPAGAAESPAALDPAAGWLPAPVPGTVASALRAAGRWDD AMPPPLHQYDHWYRVNFAGRGRRVLRFNGLATVVEAWLNGKLVLSARHMFVAHEVEVDLDGDNLMHLCFRALHPWLRKQR GPVRWKPRMIVPPILRAIRTTLLGHMPGWCPPVHAVGPWRPVELLDPASDDILHGVRADLWGRVQGDRGVIGLHLHFPAS APASGSFEAIDGEGCIYPGSLSRTDRFTLEGTVCVERPKLWWPHTHGEPHLYRVDATIEGRAIHCGRVGFRTISLDCSSD AGAFALRINGEPLFCRGACISSNDLHGLADTDEASRHWLELARRGGMNMVRISGVTCYPGAAFYRICDELGLLVWHDFMF ANFDYGSIGPGLGLTEDITREVGDWLSATLTHPSIAVLCGGSEAEQQAAMMGVSRSDWKQPLFDELIRGLVAAKRPDVVY VGNSPTGGAWPFQPDTGVSHYYGVGAYQRPLADARLAQVRFASECLAFANVPCERTLAEHGLSQPLHSPRWKATIPRDAG APWDFEDVREYYLRTLYEVDPPRLRYEQPQRYLVLSRAVVAEVMTEVFSEWRRVGSSCAGGLIWQLQDLVPGAGWGIVDA CGRPKSAWHALRQVWQPLQVLITDEGLNGLHVHAINETPQPHALSLTLRCLRDGETVVAEARHSLLLPARGAARIEAAAL LDRFFDFTYAYRFGPPTHDVVVVTLHAADSGEPLSQAVYLPDRRAAALKPPGLRARLEQVDGDWWLTVSAQRFARWVHID DHAFQATDNWFHLAPGSSRRLRLVHEAGKAGAHAPAIPSGEIHAVNAEHPLGYDG
Specific function: Unknown
COG id: COG3250
COG function: function code G; Beta-galactosidase/beta-glucuronidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI84798622, Length=702, Percent_Identity=22.3646723646724, Blast_Score=117, Evalue=5e-26, Organism=Caenorhabditis elegans, GI17550784, Length=624, Percent_Identity=21.6346153846154, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI24643838, Length=692, Percent_Identity=23.6994219653179, Blast_Score=110, Evalue=5e-24, Organism=Drosophila melanogaster, GI24643840, Length=569, Percent_Identity=23.9015817223199, Blast_Score=98, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93921; Mature: 93921
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSQTYPDTSILASGQQALPGGRPGVAIGSTALGGEWTWVQTPAGAAESPAALDPAAGWL CCCCCCCCHHHHCCCHHHCCCCCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC PAPVPGTVASALRAAGRWDDAMPPPLHQYDHWYRVNFAGRGRRVLRFNGLATVVEAWLNG CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHCC KLVLSARHMFVAHEVEVDLDGDNLMHLCFRALHPWLRKQRGPVRWKPRMIVPPILRAIRT EEEEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHH TLLGHMPGWCPPVHAVGPWRPVELLDPASDDILHGVRADLWGRVQGDRGVIGLHLHFPAS HHHHCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHEEECCCCCEEEEEEECCCC APASGSFEAIDGEGCIYPGSLSRTDRFTLEGTVCVERPKLWWPHTHGEPHLYRVDATIEG CCCCCCEEEECCCCCEECCCCCCCCEEEEEEEEEEECCCEECCCCCCCCEEEEEECEECC RAIHCGRVGFRTISLDCSSDAGAFALRINGEPLFCRGACISSNDLHGLADTDEASRHWLE CEEEECCCCEEEEEEECCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH LARRGGMNMVRISGVTCYPGAAFYRICDELGLLVWHDFMFANFDYGSIGPGLGLTEDITR HHHHCCCCEEEEECEEECCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHH EVGDWLSATLTHPSIAVLCGGSEAEQQAAMMGVSRSDWKQPLFDELIRGLVAAKRPDVVY HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHCCCCCEEE VGNSPTGGAWPFQPDTGVSHYYGVGAYQRPLADARLAQVRFASECLAFANVPCERTLAEH ECCCCCCCCCCCCCCCCCCCEECCCCHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC GLSQPLHSPRWKATIPRDAGAPWDFEDVREYYLRTLYEVDPPRLRYEQPQRYLVLSRAVV CCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH AEVMTEVFSEWRRVGSSCAGGLIWQLQDLVPGAGWGIVDACGRPKSAWHALRQVWQPLQV HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHEE LITDEGLNGLHVHAINETPQPHALSLTLRCLRDGETVVAEARHSLLLPARGAARIEAAAL EEECCCCCCEEEEEECCCCCCCEEEEEEEEHHCCCHHHHHHHHCEEECCCCCHHHHHHHH LDRFFDFTYAYRFGPPTHDVVVVTLHAADSGEPLSQAVYLPDRRAAALKPPGLRARLEQV HHHHHHHHEEEECCCCCCCEEEEEEEECCCCCCHHHEEECCCCCCCCCCCCCHHHHHHHC DGDWWLTVSAQRFARWVHIDDHAFQATDNWFHLAPGSSRRLRLVHEAGKAGAHAPAIPSG CCCEEEEEEHHHCEEEEEECCCEEECCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCC EIHAVNAEHPLGYDG CEEEECCCCCCCCCC >Mature Secondary Structure MKSQTYPDTSILASGQQALPGGRPGVAIGSTALGGEWTWVQTPAGAAESPAALDPAAGWL CCCCCCCCHHHHCCCHHHCCCCCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC PAPVPGTVASALRAAGRWDDAMPPPLHQYDHWYRVNFAGRGRRVLRFNGLATVVEAWLNG CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHCC KLVLSARHMFVAHEVEVDLDGDNLMHLCFRALHPWLRKQRGPVRWKPRMIVPPILRAIRT EEEEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHH TLLGHMPGWCPPVHAVGPWRPVELLDPASDDILHGVRADLWGRVQGDRGVIGLHLHFPAS HHHHCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHEEECCCCCEEEEEEECCCC APASGSFEAIDGEGCIYPGSLSRTDRFTLEGTVCVERPKLWWPHTHGEPHLYRVDATIEG CCCCCCEEEECCCCCEECCCCCCCCEEEEEEEEEEECCCEECCCCCCCCEEEEEECEECC RAIHCGRVGFRTISLDCSSDAGAFALRINGEPLFCRGACISSNDLHGLADTDEASRHWLE CEEEECCCCEEEEEEECCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH LARRGGMNMVRISGVTCYPGAAFYRICDELGLLVWHDFMFANFDYGSIGPGLGLTEDITR HHHHCCCCEEEEECEEECCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHH EVGDWLSATLTHPSIAVLCGGSEAEQQAAMMGVSRSDWKQPLFDELIRGLVAAKRPDVVY HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHCCCCCEEE VGNSPTGGAWPFQPDTGVSHYYGVGAYQRPLADARLAQVRFASECLAFANVPCERTLAEH ECCCCCCCCCCCCCCCCCCCEECCCCHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC GLSQPLHSPRWKATIPRDAGAPWDFEDVREYYLRTLYEVDPPRLRYEQPQRYLVLSRAVV CCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH AEVMTEVFSEWRRVGSSCAGGLIWQLQDLVPGAGWGIVDACGRPKSAWHALRQVWQPLQV HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHEE LITDEGLNGLHVHAINETPQPHALSLTLRCLRDGETVVAEARHSLLLPARGAARIEAAAL EEECCCCCCEEEEEECCCCCCCEEEEEEEEHHCCCHHHHHHHHCEEECCCCCHHHHHHHH LDRFFDFTYAYRFGPPTHDVVVVTLHAADSGEPLSQAVYLPDRRAAALKPPGLRARLEQV HHHHHHHHEEEECCCCCCCEEEEEEEECCCCCCHHHEEECCCCCCCCCCCCCHHHHHHHC DGDWWLTVSAQRFARWVHIDDHAFQATDNWFHLAPGSSRRLRLVHEAGKAGAHAPAIPSG CCCEEEEEEHHHCEEEEEECCCEEECCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCC EIHAVNAEHPLGYDG CEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA