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The map label for this gene is slmA [H]

Identifier: 116691116

GI number: 116691116

Start: 3410999

End: 3411661

Strand: Direct

Name: slmA [H]

Synonym: Bcen2424_3098

Alternate gene names: 116691116

Gene position: 3410999-3411661 (Clockwise)

Preceding gene: 116691115

Following gene: 116691117

Centisome position: 97.91

GC content: 68.78

Gene sequence:

>663_bases
ATGCAGCCGACTTACCCGCAGGACCAAGCCGTAACGGAAAGCCAGGCCACACCCTCCCGCCCGCGCCCGAAGCCGGGCGA
GCGCCGCGTCATGATCCTGCAGACGCTCGCGGCGATGCTCGAGGCCCCGAAACCCGAGAAAATCACGACCGCCGCGCTCG
CGGCCCGGCTCGACGTGTCGGAAGCCGCGCTGTACCGGCACTTCGCCAGCAAGGCGAAGATGTACGAAGGGTTGATCGAG
TTCATCGAGCAGGCGCTGTTCGGGCTCGTCAACCAGATCGTCGCGAAGGAGCCGAACGGCGTGCTGCAGGCCCGCACGAT
CGCGCTGACGATGCTCAATTTCGCCGCAAAGAACCCGGGCATGACGCGCGTGCTGACCGGCGAGGCGCTGGTCGGCGAGG
ACGAGCGGCTCACCGAGCGCGTGAACCAGCTGCTCGACCGCATCGAGGCGACCGTCAAGCAATGCCTGCGCGTCGCGCGC
ACCGAGGCGCAGGCGCCCGATGGCGCGACGCCGTTCGTGCTGCCGGCCGACTACGATCCCGGCGCCCGCGCGAGCCTGCT
CGTCAGCTACGTGATCGGCCGGTGGCATCGGTTCGCCAAAGGCGGGTTCCAGAAGCCGCCGGGCGAGCAGGCCGATGCGC
ATCTGCGGTTGATCCTGCAGTGA

Upstream 100 bases:

>100_bases
TGCCCGGCCATCTGCCGGCGACCGGACGCCCGCATTATGTCGACCAGCGCATTCGTTCGTTAAAATCGCTGCGACTGGGC
ACACGATCGGGGCGACAAAA

Downstream 100 bases:

>100_bases
CCGGCGCGTGACGGTACGCCCGCCATGCGCCCGAATCCGGGCCTCGCAATTTCCGCTATACTTTGCCGACTGTCGCCTCA
CGGGCGGCAGGTCGGAAGCG

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MQPTYPQDQAVTESQATPSRPRPKPGERRVMILQTLAAMLEAPKPEKITTAALAARLDVSEAALYRHFASKAKMYEGLIE
FIEQALFGLVNQIVAKEPNGVLQARTIALTMLNFAAKNPGMTRVLTGEALVGEDERLTERVNQLLDRIEATVKQCLRVAR
TEAQAPDGATPFVLPADYDPGARASLLVSYVIGRWHRFAKGGFQKPPGEQADAHLRLILQ

Sequences:

>Translated_220_residues
MQPTYPQDQAVTESQATPSRPRPKPGERRVMILQTLAAMLEAPKPEKITTAALAARLDVSEAALYRHFASKAKMYEGLIE
FIEQALFGLVNQIVAKEPNGVLQARTIALTMLNFAAKNPGMTRVLTGEALVGEDERLTERVNQLLDRIEATVKQCLRVAR
TEAQAPDGATPFVLPADYDPGARASLLVSYVIGRWHRFAKGGFQKPPGEQADAHLRLILQ
>Mature_220_residues
MQPTYPQDQAVTESQATPSRPRPKPGERRVMILQTLAAMLEAPKPEKITTAALAARLDVSEAALYRHFASKAKMYEGLIE
FIEQALFGLVNQIVAKEPNGVLQARTIALTMLNFAAKNPGMTRVLTGEALVGEDERLTERVNQLLDRIEATVKQCLRVAR
TEAQAPDGATPFVLPADYDPGARASLLVSYVIGRWHRFAKGGFQKPPGEQADAHLRLILQ

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082302, Length=192, Percent_Identity=43.75, Blast_Score=135, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24199; Mature: 24199

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPTYPQDQAVTESQATPSRPRPKPGERRVMILQTLAAMLEAPKPEKITTAALAARLDVS
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
EAALYRHFASKAKMYEGLIEFIEQALFGLVNQIVAKEPNGVLQARTIALTMLNFAAKNPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
MTRVLTGEALVGEDERLTERVNQLLDRIEATVKQCLRVARTEAQAPDGATPFVLPADYDP
CEEEEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCC
GARASLLVSYVIGRWHRFAKGGFQKPPGEQADAHLRLILQ
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MQPTYPQDQAVTESQATPSRPRPKPGERRVMILQTLAAMLEAPKPEKITTAALAARLDVS
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
EAALYRHFASKAKMYEGLIEFIEQALFGLVNQIVAKEPNGVLQARTIALTMLNFAAKNPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
MTRVLTGEALVGEDERLTERVNQLLDRIEATVKQCLRVARTEAQAPDGATPFVLPADYDP
CEEEEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCC
GARASLLVSYVIGRWHRFAKGGFQKPPGEQADAHLRLILQ
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA