| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116691058
Identifier: 116691058
GI number: 116691058
Start: 3353408
End: 3354553
Strand: Reverse
Name: 116691058
Synonym: Bcen2424_3040
Alternate gene names: NA
Gene position: 3354553-3353408 (Counterclockwise)
Preceding gene: 116691059
Following gene: 116691054
Centisome position: 96.29
GC content: 71.55
Gene sequence:
>1146_bases ATGCCTGAAGCGTTGGCGGCGCGCGTGTCCGGCGTGCGCCGTGCGGGGGCAGGCGGCGCGCGCGTGATGCGCGCGTACCG CTACGCGCGGCGCTGGAGCGTGCGTACCGTCACGGGCGCGGCGCTGGCCGGCGCGTGCGCGGCGGCCAGCGTCGTGGTCC CCGTTGAGCCGGTGCGCGCCGAGGGGCGTGCGCCGGCGACTTCGCCGATTCGTCCGTCGCAGGTTCCGCCGCCCGGCATG AGCCTGCCGGGCTTCCATACGCCGGCCGTGTCCGACGGCACCGTGTCGCGCGGCACCGTGCGCGTGCAGCCGGCGCGCAT GCCGTTCTACGTCGCGACCAAGGGCAAGGTCACGCTCTACGTGCTCGGCACGCTGCACACGGGCGATCCGTCCGATTACC CGAGCGCGCAGCCGTTCCGGCCGCGCATCCTCGCGGCGCTCGCCGCGTCGCCGACGCTCGCGCTCGAGCTGTCGCCCGAC GATCTGCTCGAATCGCAGGACGACGTGTCGAAGTACGGCGTGTGCCGCTACCCGTGCCTGCAGCGCCTGCTGCCCGAGCC GCTGTGGCAGCGGCTCGCGGCGCGCCTGCGCGGCAACCCGGCCGCGCTCGCCGAGATCCGCAAGATGCGGCCGTGGCTCG CGGCGCTCGTCGTCGAGACCTACGATTCGCTGTCCGCGGGCCTGCAGACCGAATACGGTACCGAGGCGCAACTGCAGAAC GTGTTCCTGAAGAAGAAGGGCGGCCGCGTGATCGGACTCGAGACGCTCGCCGAACAGATGCGCGCGTTCACCGGGCTGAC GCTGGCCGAGCAGCGCGAGATGCTCGCGCAGGACATGGTGCAGACACCCGCGCAGAACGCCGACGACATCAAGGCGCTGC ACCGGCTGTGGCGAATTGGCGACGCCGATGCGATCTCGGCGTGGGCCGTCGCGAAGAGCGAACGGCTCGCCCGTTCGAAG GCGCTGTCGGCGTCGCTCGACAACAAGATCGTGTACGAGCGCAACCGGCGCTTCGTTGCACGGATGACTGCAATCGCCGC GCCGAACCGGCCGCTGTTCGTCGCGATCGGTGCGCTGCATCTGGGTGGCCCGCGCGGCGTGCTCGAATTGTTGCGCCAGC AAGGATACCGGGTCGACGCGAACTGA
Upstream 100 bases:
>100_bases CCGTACGCGGTCGAGCGGTGCCGCGTCGAGGAGCCGCAATTGCGCGAAGTGGACGGCCGGCGTGTAGCCTGCCATCGCGC CGAGGAGGTCGGGGAGGAGA
Downstream 100 bases:
>100_bases TCGCGCCCGGCTAGCCGCACTGATCGTCCCCTGTTTGATCGACGTCGCGCGTACCGTGCGACGTGCCTGCGCGGTAGTGC CGCTCGATAAGGAAAACCCT
Product: GumN family protein
Products: NA
Alternate protein names: GumN Protein; SLA2 Protein
Number of amino acids: Translated: 381; Mature: 380
Protein sequence:
>381_residues MPEALAARVSGVRRAGAGGARVMRAYRYARRWSVRTVTGAALAGACAAASVVVPVEPVRAEGRAPATSPIRPSQVPPPGM SLPGFHTPAVSDGTVSRGTVRVQPARMPFYVATKGKVTLYVLGTLHTGDPSDYPSAQPFRPRILAALAASPTLALELSPD DLLESQDDVSKYGVCRYPCLQRLLPEPLWQRLAARLRGNPAALAEIRKMRPWLAALVVETYDSLSAGLQTEYGTEAQLQN VFLKKKGGRVIGLETLAEQMRAFTGLTLAEQREMLAQDMVQTPAQNADDIKALHRLWRIGDADAISAWAVAKSERLARSK ALSASLDNKIVYERNRRFVARMTAIAAPNRPLFVAIGALHLGGPRGVLELLRQQGYRVDAN
Sequences:
>Translated_381_residues MPEALAARVSGVRRAGAGGARVMRAYRYARRWSVRTVTGAALAGACAAASVVVPVEPVRAEGRAPATSPIRPSQVPPPGM SLPGFHTPAVSDGTVSRGTVRVQPARMPFYVATKGKVTLYVLGTLHTGDPSDYPSAQPFRPRILAALAASPTLALELSPD DLLESQDDVSKYGVCRYPCLQRLLPEPLWQRLAARLRGNPAALAEIRKMRPWLAALVVETYDSLSAGLQTEYGTEAQLQN VFLKKKGGRVIGLETLAEQMRAFTGLTLAEQREMLAQDMVQTPAQNADDIKALHRLWRIGDADAISAWAVAKSERLARSK ALSASLDNKIVYERNRRFVARMTAIAAPNRPLFVAIGALHLGGPRGVLELLRQQGYRVDAN >Mature_380_residues PEALAARVSGVRRAGAGGARVMRAYRYARRWSVRTVTGAALAGACAAASVVVPVEPVRAEGRAPATSPIRPSQVPPPGMS LPGFHTPAVSDGTVSRGTVRVQPARMPFYVATKGKVTLYVLGTLHTGDPSDYPSAQPFRPRILAALAASPTLALELSPDD LLESQDDVSKYGVCRYPCLQRLLPEPLWQRLAARLRGNPAALAEIRKMRPWLAALVVETYDSLSAGLQTEYGTEAQLQNV FLKKKGGRVIGLETLAEQMRAFTGLTLAEQREMLAQDMVQTPAQNADDIKALHRLWRIGDADAISAWAVAKSERLARSKA LSASLDNKIVYERNRRFVARMTAIAAPNRPLFVAIGALHLGGPRGVLELLRQQGYRVDAN
Specific function: Unknown
COG id: COG3735
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41231; Mature: 41100
Theoretical pI: Translated: 10.68; Mature: 10.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEALAARVSGVRRAGAGGARVMRAYRYARRWSVRTVTGAALAGACAAASVVVPVEPVRA CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCEEEEECCCCCC EGRAPATSPIRPSQVPPPGMSLPGFHTPAVSDGTVSRGTVRVQPARMPFYVATKGKVTLY CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCEEEE VLGTLHTGDPSDYPSAQPFRPRILAALAASPTLALELSPDDLLESQDDVSKYGVCRYPCL EEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECHHHHHCCHHHHHHCCCCHHHHH QRLLPEPLWQRLAARLRGNPAALAEIRKMRPWLAALVVETYDSLSAGLQTEYGTEAQLQN HHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH VFLKKKGGRVIGLETLAEQMRAFTGLTLAEQREMLAQDMVQTPAQNADDIKALHRLWRIG HHHHCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC DADAISAWAVAKSERLARSKALSASLDNKIVYERNRRFVARMTAIAAPNRPLFVAIGALH CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHCCHHHHHHHHHCCCCCCEEEEEEEEE LGGPRGVLELLRQQGYRVDAN CCCHHHHHHHHHHCCCEECCC >Mature Secondary Structure PEALAARVSGVRRAGAGGARVMRAYRYARRWSVRTVTGAALAGACAAASVVVPVEPVRA CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCEEEEECCCCCC EGRAPATSPIRPSQVPPPGMSLPGFHTPAVSDGTVSRGTVRVQPARMPFYVATKGKVTLY CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCEEEE VLGTLHTGDPSDYPSAQPFRPRILAALAASPTLALELSPDDLLESQDDVSKYGVCRYPCL EEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECHHHHHCCHHHHHHCCCCHHHHH QRLLPEPLWQRLAARLRGNPAALAEIRKMRPWLAALVVETYDSLSAGLQTEYGTEAQLQN HHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH VFLKKKGGRVIGLETLAEQMRAFTGLTLAEQREMLAQDMVQTPAQNADDIKALHRLWRIG HHHHCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC DADAISAWAVAKSERLARSKALSASLDNKIVYERNRRFVARMTAIAAPNRPLFVAIGALH CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHCCHHHHHHHHHCCCCCCEEEEEEEEE LGGPRGVLELLRQQGYRVDAN CCCHHHHHHHHHHCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA