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The map label for this gene is ybgJ [H]

Identifier: 116691055

GI number: 116691055

Start: 3350308

End: 3350964

Strand: Direct

Name: ybgJ [H]

Synonym: Bcen2424_3037

Alternate gene names: 116691055

Gene position: 3350308-3350964 (Clockwise)

Preceding gene: 116691053

Following gene: 116691056

Centisome position: 96.17

GC content: 74.89

Gene sequence:

>657_bases
ATGACGCAACCCCGCATTTATCCGCTCGGCGATGCCGCCCTCGTCTGCGAGGTGCCGCCGCCCGCCACGCTCGATTGCCA
GCGCCGCGTCTGGGCCGTGGCCGAGGCCGCGCGCGCGTGGCCCGACGTGATCGACGTCGTCCCCGGCATGAACAACCTGA
CCATCGTGTTCGACGCGCTCGCCGCGACGGCCGACTCGCTCACGCCCGCGCTGCGCGACGCGTGGGAAACCGCCGACGTC
GAACACGCGGACGGCCGCGAGGTCGAAATCCCGGTCGAGTACGGCGGGGCCGCCGGGCCCGACCTGGCGGCCGTCGCCGC
CCACACGGGGCTGTCGGCCGACGAGGTCGTCGCACGCCACGCGGCCGGCGCCTACGTCGTGTTCTTCGTCGGGTTCCAGC
CGGGCTTCGCGTATCTGGGCGGCCTCGACGCCGCGCTGCACATGCCGCGCCGCGCGGCGCCGCGCCTCGAGGTGCCGGCC
GGCTCGGTCGGCATCGGCGGCGCGCAGACGGGCATCTACCCGGCCACGTCGCCCGGCGGCTGGCAACTGATCGGCCGCAC
GTCGCAGGTGCTGTTCGACCCGGCGCGGCCGCAGCCGACGCTGCTGCTGCCCGGCGACCGCGTGCGCTTCACCATTGCGG
GAGTCGACGCACGATGA

Upstream 100 bases:

>100_bases
AAGCCCCGGCCTACGAGCTAGGCGAAAACGCTTATTGAGAAGTTGTCGATATTTTATTGACAATGTGCGCTAACATTGCC
GTCCGAACCGTGCCAGTCCG

Downstream 100 bases:

>100_bases
CCCAGAGCAACGCACCGGGCACCATCGAGGTCGTGCGGGCCGGCCCGCTGTCGACCGTGCAGGATCTCGGCCGCCGCGGC
ACGCGCCATCTCGGCGTCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MTQPRIYPLGDAALVCEVPPPATLDCQRRVWAVAEAARAWPDVIDVVPGMNNLTIVFDALAATADSLTPALRDAWETADV
EHADGREVEIPVEYGGAAGPDLAAVAAHTGLSADEVVARHAAGAYVVFFVGFQPGFAYLGGLDAALHMPRRAAPRLEVPA
GSVGIGGAQTGIYPATSPGGWQLIGRTSQVLFDPARPQPTLLLPGDRVRFTIAGVDAR

Sequences:

>Translated_218_residues
MTQPRIYPLGDAALVCEVPPPATLDCQRRVWAVAEAARAWPDVIDVVPGMNNLTIVFDALAATADSLTPALRDAWETADV
EHADGREVEIPVEYGGAAGPDLAAVAAHTGLSADEVVARHAAGAYVVFFVGFQPGFAYLGGLDAALHMPRRAAPRLEVPA
GSVGIGGAQTGIYPATSPGGWQLIGRTSQVLFDPARPQPTLLLPGDRVRFTIAGVDAR
>Mature_217_residues
TQPRIYPLGDAALVCEVPPPATLDCQRRVWAVAEAARAWPDVIDVVPGMNNLTIVFDALAATADSLTPALRDAWETADVE
HADGREVEIPVEYGGAAGPDLAAVAAHTGLSADEVVARHAAGAYVVFFVGFQPGFAYLGGLDAALHMPRRAAPRLEVPAG
SVGIGGAQTGIYPATSPGGWQLIGRTSQVLFDPARPQPTLLLPGDRVRFTIAGVDAR

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=211, Percent_Identity=54.0284360189574, Blast_Score=233, Evalue=8e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 22784; Mature: 22653

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPRIYPLGDAALVCEVPPPATLDCQRRVWAVAEAARAWPDVIDVVPGMNNLTIVFDAL
CCCCCEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEEEEHH
AATADSLTPALRDAWETADVEHADGREVEIPVEYGGAAGPDLAAVAAHTGLSADEVVARH
HHHHHHCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCHHHHHHHH
AAGAYVVFFVGFQPGFAYLGGLDAALHMPRRAAPRLEVPAGSVGIGGAQTGIYPATSPGG
CCCEEEEEEEECCCCHHHHCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
WQLIGRTSQVLFDPARPQPTLLLPGDRVRFTIAGVDAR
EEEECCCCEEEECCCCCCCEEEECCCCEEEEEEECCCC
>Mature Secondary Structure 
TQPRIYPLGDAALVCEVPPPATLDCQRRVWAVAEAARAWPDVIDVVPGMNNLTIVFDAL
CCCCEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEEEEHH
AATADSLTPALRDAWETADVEHADGREVEIPVEYGGAAGPDLAAVAAHTGLSADEVVARH
HHHHHHCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCHHHHHHHH
AAGAYVVFFVGFQPGFAYLGGLDAALHMPRRAAPRLEVPAGSVGIGGAQTGIYPATSPGG
CCCEEEEEEEECCCCHHHHCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
WQLIGRTSQVLFDPARPQPTLLLPGDRVRFTIAGVDAR
EEEECCCCEEEECCCCCCCEEEECCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]