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The map label for this gene is flgD [H]

Identifier: 116691041

GI number: 116691041

Start: 3336772

End: 3337518

Strand: Reverse

Name: flgD [H]

Synonym: Bcen2424_3023

Alternate gene names: 116691041

Gene position: 3337518-3336772 (Counterclockwise)

Preceding gene: 116691042

Following gene: 116691040

Centisome position: 95.8

GC content: 68.27

Gene sequence:

>747_bases
ATGACTTCCTCCAACACGACGATCGGCAGCAACGGCACCAACGTGTCGACGCTGCCGACCGACACGATGAACACCAACAA
CGTGTCGTCGACCAACGGCACGTCGGCGAGCGACCTGCAGGCGACGTTCCTGAAGCTGCTCGTCACGCAGCTGCAGAACC
AGGACCCGACCAGCCCGGTCGACAGCTCGCAGATGACGTCGCAGCTCGCGCAGATCAACACGGTGAGCGGCATCGCGCAA
CTGAACACGTCGCTCACGTCGCTGTCGACGCAGCTCGCGGCCGGCCAGCAGACGCAGGCCGCGCTGCTGATCGGCACGAA
CGTGCTCGCGCCGGGCAACTCGGTCGCGGTGAAGAGCGGCGCGGCGTCGCCGTTCGGCGTGTCGCTCGCGAGCTCGGTGT
CGAACCTGACGATCACCGTGAAGAACTCGGCGGGCGCCGTCGTGAACACGATCAACGCGGGCGCGCAGTCGGCCGGCACC
GTGCCGTTCAACTGGACCCCGACCGACGCGGCCGGCAACGCGCTGCCGGACGGCAAGTACACGGTCAGCGCGTCGTACAC
CGACAGCACCGGCACGCCGCACGCGGCCACGACGCTCGCGGCCTCGCAGGTGCAGAGCGTGGTCAAGCAGGCGGACGGCA
CCGCGGGGCTCGTGCTGTCGAACGGCACGACGGTGGGGCTCACCCAGGTTGCGTCGATCTTCCCGAACACGAAGTCGTCC
TCGTCCGGCGACACCACCACCAACTGA

Upstream 100 bases:

>100_bases
CGAAGACGCTGATGCTCAAGACGCTGACGATCGGCTCGTAAGCCGCGCGCCGCCGACCTGACCGACCCGACACCGACAGT
TCCGACAGAAGGCCAACAGG

Downstream 100 bases:

>100_bases
TCGAGCTTTCCCGTAACGGAGAACGAAATGGGTTATCAACAGGGTCTGAGCGGCCTCTCGGGCGCATCGAACGCGCTCGA
CGTGATCGGCAACAACATCG

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MTSSNTTIGSNGTNVSTLPTDTMNTNNVSSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQ
LNTSLTSLSTQLAAGQQTQAALLIGTNVLAPGNSVAVKSGAASPFGVSLASSVSNLTITVKNSAGAVVNTINAGAQSAGT
VPFNWTPTDAAGNALPDGKYTVSASYTDSTGTPHAATTLAASQVQSVVKQADGTAGLVLSNGTTVGLTQVASIFPNTKSS
SSGDTTTN

Sequences:

>Translated_248_residues
MTSSNTTIGSNGTNVSTLPTDTMNTNNVSSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQ
LNTSLTSLSTQLAAGQQTQAALLIGTNVLAPGNSVAVKSGAASPFGVSLASSVSNLTITVKNSAGAVVNTINAGAQSAGT
VPFNWTPTDAAGNALPDGKYTVSASYTDSTGTPHAATTLAASQVQSVVKQADGTAGLVLSNGTTVGLTQVASIFPNTKSS
SSGDTTTN
>Mature_247_residues
TSSNTTIGSNGTNVSTLPTDTMNTNNVSSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQL
NTSLTSLSTQLAAGQQTQAALLIGTNVLAPGNSVAVKSGAASPFGVSLASSVSNLTITVKNSAGAVVNTINAGAQSAGTV
PFNWTPTDAAGNALPDGKYTVSASYTDSTGTPHAATTLAASQVQSVVKQADGTAGLVLSNGTTVGLTQVASIFPNTKSSS
SGDTTTN

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=208, Percent_Identity=42.3076923076923, Blast_Score=135, Evalue=4e-33,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 24632; Mature: 24501

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSNTTIGSNGTNVSTLPTDTMNTNNVSSTNGTSASDLQATFLKLLVTQLQNQDPTSPV
CCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
DSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQAALLIGTNVLAPGNSVAVKSG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECEEECCCCCEEEECC
AASPFGVSLASSVSNLTITVKNSAGAVVNTINAGAQSAGTVPFNWTPTDAAGNALPDGKY
CCCCCCHHHHCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
TVSASYTDSTGTPHAATTLAASQVQSVVKQADGTAGLVLSNGTTVGLTQVASIFPNTKSS
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEHHHHHHHHCCCCCCC
SSGDTTTN
CCCCCCCC
>Mature Secondary Structure 
TSSNTTIGSNGTNVSTLPTDTMNTNNVSSTNGTSASDLQATFLKLLVTQLQNQDPTSPV
CCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
DSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQAALLIGTNVLAPGNSVAVKSG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECEEECCCCCEEEECC
AASPFGVSLASSVSNLTITVKNSAGAVVNTINAGAQSAGTVPFNWTPTDAAGNALPDGKY
CCCCCCHHHHCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
TVSASYTDSTGTPHAATTLAASQVQSVVKQADGTAGLVLSNGTTVGLTQVASIFPNTKSS
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEHHHHHHHHCCCCCCC
SSGDTTTN
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]