Click here to switch to the map view.

The map label for this gene is ymdB [C]

Identifier: 116690872

GI number: 116690872

Start: 3152022

End: 3152546

Strand: Reverse

Name: ymdB [C]

Synonym: Bcen2424_2852

Alternate gene names: 116690872

Gene position: 3152546-3152022 (Counterclockwise)

Preceding gene: 116690873

Following gene: 116690869

Centisome position: 90.49

GC content: 71.43

Gene sequence:

>525_bases
ATGCTGCAGATCCATTCCACCACGCTCGATGCGCAGGTCGTCGACATCACGACGCTCGATGTCGATGCGATCGTCAATGC
CGCGAACGGTTCGCTGCTCGGCGGGGGCGGCGTCGACGGCGCGATTCACCGCGCGGCCGGCCCCGGCCTGCTCGCCGAGT
GCCGCACGCTCGGCGGGTGCGACACCGGCGACGCGAAGCTCACGCGCGGCCACGGGTTGCCGGCGCGCTACGTGATCCAC
GCGGTCGGGCCGGTCTGGTACGGCGGCGCGCGCGGCGAGGCCGACCTGCTCGCGTCGTGCTACCGGCGCGCGATCGAGCT
GGCCGAGGAGGTTGCCGCGACGTCGATCGCGTTCCCGGCGATCAGTTGCGGCGTCTACCGCTATCCGGCCGAAGCCGCCG
TCGACATCGCGGTCGGCACCGTCGTCGAGATGCTCGCGCAGGCGCCGAACCTCGCACGCGTGGTGTTCGCGTGCTTTTCC
CCCGACATCTACGACCTGTACCGCGCGCGGCTCGCACGAACCTGA

Upstream 100 bases:

>100_bases
CCGAGTAGCACGGGCCGGGTTCGCCCGGCACGGTCGCGCCGGGCGCGCGGCGCCAAAGCGGACTACGCTTGAACAGTCTT
CGGCGTTCCGCGAGGTTGTC

Downstream 100 bases:

>100_bases
CGCCTTCGCCGCGGGCTACGCCCGGCGCGTGTCAGGCGCCGCCTTCGAAGCCGGCCTGGCGCCACGCCTCGAACACGACC
ACCGCGACCGTGTTCGACAG

Product: appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MLQIHSTTLDAQVVDITTLDVDAIVNAANGSLLGGGGVDGAIHRAAGPGLLAECRTLGGCDTGDAKLTRGHGLPARYVIH
AVGPVWYGGARGEADLLASCYRRAIELAEEVAATSIAFPAISCGVYRYPAEAAVDIAVGTVVEMLAQAPNLARVVFACFS
PDIYDLYRARLART

Sequences:

>Translated_174_residues
MLQIHSTTLDAQVVDITTLDVDAIVNAANGSLLGGGGVDGAIHRAAGPGLLAECRTLGGCDTGDAKLTRGHGLPARYVIH
AVGPVWYGGARGEADLLASCYRRAIELAEEVAATSIAFPAISCGVYRYPAEAAVDIAVGTVVEMLAQAPNLARVVFACFS
PDIYDLYRARLART
>Mature_174_residues
MLQIHSTTLDAQVVDITTLDVDAIVNAANGSLLGGGGVDGAIHRAAGPGLLAECRTLGGCDTGDAKLTRGHGLPARYVIH
AVGPVWYGGARGEADLLASCYRRAIELAEEVAATSIAFPAISCGVYRYPAEAAVDIAVGTVVEMLAQAPNLARVVFACFS
PDIYDLYRARLART

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=159, Percent_Identity=53.4591194968553, Blast_Score=169, Evalue=1e-42,
Organism=Homo sapiens, GI13569840, Length=159, Percent_Identity=54.7169811320755, Blast_Score=161, Evalue=3e-40,
Organism=Homo sapiens, GI207450721, Length=145, Percent_Identity=40.6896551724138, Blast_Score=103, Evalue=5e-23,
Organism=Homo sapiens, GI8923143, Length=145, Percent_Identity=40.6896551724138, Blast_Score=103, Evalue=6e-23,
Organism=Homo sapiens, GI154813199, Length=143, Percent_Identity=39.1608391608392, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI20336746, Length=170, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI93141018, Length=171, Percent_Identity=24.5614035087719, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI93141020, Length=171, Percent_Identity=24.5614035087719, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI4758496, Length=171, Percent_Identity=24.5614035087719, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI226371718, Length=154, Percent_Identity=30.5194805194805, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI226371716, Length=154, Percent_Identity=30.5194805194805, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI226371714, Length=154, Percent_Identity=30.5194805194805, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI226371712, Length=154, Percent_Identity=30.5194805194805, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI226371710, Length=154, Percent_Identity=30.5194805194805, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI226371706, Length=154, Percent_Identity=30.5194805194805, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI1787283, Length=163, Percent_Identity=50.3067484662577, Blast_Score=148, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI17538214, Length=148, Percent_Identity=46.6216216216216, Blast_Score=120, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24586353, Length=146, Percent_Identity=35.6164383561644, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18085; Mature: 18085

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQIHSTTLDAQVVDITTLDVDAIVNAANGSLLGGGGVDGAIHRAAGPGLLAECRTLGGC
CEEECCCCCCEEEEEEEEECHHHHHCCCCCCEECCCCCCCHHHHCCCCCHHHHHHHCCCC
DTGDAKLTRGHGLPARYVIHAVGPVWYGGARGEADLLASCYRRAIELAEEVAATSIAFPA
CCCCCEEECCCCCCHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISCGVYRYPAEAAVDIAVGTVVEMLAQAPNLARVVFACFSPDIYDLYRARLART
HHCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MLQIHSTTLDAQVVDITTLDVDAIVNAANGSLLGGGGVDGAIHRAAGPGLLAECRTLGGC
CEEECCCCCCEEEEEEEEECHHHHHCCCCCCEECCCCCCCHHHHCCCCCHHHHHHHCCCC
DTGDAKLTRGHGLPARYVIHAVGPVWYGGARGEADLLASCYRRAIELAEEVAATSIAFPA
CCCCCEEECCCCCCHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISCGVYRYPAEAAVDIAVGTVVEMLAQAPNLARVVFACFSPDIYDLYRARLART
HHCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]