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The map label for this gene is cydB [H]

Identifier: 116690838

GI number: 116690838

Start: 3114157

End: 3115293

Strand: Direct

Name: cydB [H]

Synonym: Bcen2424_2818

Alternate gene names: 116690838

Gene position: 3114157-3115293 (Clockwise)

Preceding gene: 116690837

Following gene: 116690839

Centisome position: 89.39

GC content: 66.75

Gene sequence:

>1137_bases
ATGGACTATGCAACTCTCAAGCTGATCTGGTGGCTGCTCGTCGGCGTGCTGCTGATCGGCTTCGCCGTCACCGACGGCTT
CGACATGGGCGCGACCGCGCTGCTGCCGTTCCTCGGCAAGACCGACGAGGAGCGCCGCATCATCGTCAACACGGTCGGCG
CGACCTGGGAAGGCAACCAGGTGTGGCTGATCACGGCCGGCGGCGCGATGTTCGCGGCCTGGCCGCTCGTCTATGCGGCG
TCGTTCTCCGGCTTCTACTTCGCGATGCTGCTCGTGCTGTTCGCGCTGTTCTTCCGGCCGGTGGGCTTCGACTACCGCAG
CAAGCGGCCGGACCCGCGCTGGCGCGCGGGCTGGGACTGGGGCCTGTTCGCCGGCGGCTTCGTGCCGGCGCTGGTGTTCG
GCGTCGCGTTCGGCAACCTGCTGCAGGGCGTGCCGTTCAAGTTCGACAGCGACCTGCGCGTGACCTACTACGGCGGCTTC
TGGGCGCTGCTGAATCCGTTCGCGCTGCTGTGCGGACTGGTCAGCCTCACGATGCTCGTCGCGCACGGCGCCGCGTTCAT
CAAGATGAAGACCGACGGCGTGATCGCGCGCCGTGCGTCGATCGCGCTGCGCGTCGCGTCGTTCCTCGCGGTCGTGCTGT
TCGTGCTGGCCGGCGTGCTGGTGGCCTCCTATATCGGCGGCTTCCACATCACCCATGCGGCGCCGACCGACACCGTCGCG
AACCCGCTGCTCAAGGACGTCGCCGCCGGTTCGGGCCTGTGGCTCGCGAACTACGGCGACTATCCGTGGATGATCGCGGC
GCCCGTCGTCGGGATCGCGGGCGGCGTGCTGGCACTGCTGCTCGCCGGCTCGAAGCAGGAGAAGACGGCGTTCTTCTGCA
CGGGCCTGATGATCACCGGCGTGATCCTGACCGCGGGCTTCTCGATGTTCCCGTTCATCATGCCGTCGTCGCTCGACCCG
CGCAGCAGCCTGACCGTATGGGATTCGACGTCGAGCCACATGACGCTGCAGGTGATGCTGTTCGCGGTGATCGTGTTCCT
GCCGATCGTGCTGCTCTACACGAGCTGGGTGTATCGCGTGATGCGCGGCAAGGTCACGCACCAGACGCTCGAAGAGAACA
CGCACTCGATGTATTGA

Upstream 100 bases:

>100_bases
CCGTCGTCGCTGCATACCGGCCGCTATCACCACGAACTCGCCGCTGCCGGCGAGCGGGCCGCGGTCTGAGCACGCCCTCG
CAACCGAACAAGGAATCGCT

Downstream 100 bases:

>100_bases
TGCATTGACCCGGGCCGGGGCGCGCAGGCGCCCTCGCCCACCGTTTCGCAAGGAGTCGGATCATGTGGTATTTCAGCTGG
ATTCTCGGTATCGGCGTCGC

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDEERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDWGLFAGGFVPALVFGVAFGNLLQGVPFKFDSDLRVTYYGGF
WALLNPFALLCGLVSLTMLVAHGAAFIKMKTDGVIARRASIALRVASFLAVVLFVLAGVLVASYIGGFHITHAAPTDTVA
NPLLKDVAAGSGLWLANYGDYPWMIAAPVVGIAGGVLALLLAGSKQEKTAFFCTGLMITGVILTAGFSMFPFIMPSSLDP
RSSLTVWDSTSSHMTLQVMLFAVIVFLPIVLLYTSWVYRVMRGKVTHQTLEENTHSMY

Sequences:

>Translated_378_residues
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDEERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDWGLFAGGFVPALVFGVAFGNLLQGVPFKFDSDLRVTYYGGF
WALLNPFALLCGLVSLTMLVAHGAAFIKMKTDGVIARRASIALRVASFLAVVLFVLAGVLVASYIGGFHITHAAPTDTVA
NPLLKDVAAGSGLWLANYGDYPWMIAAPVVGIAGGVLALLLAGSKQEKTAFFCTGLMITGVILTAGFSMFPFIMPSSLDP
RSSLTVWDSTSSHMTLQVMLFAVIVFLPIVLLYTSWVYRVMRGKVTHQTLEENTHSMY
>Mature_378_residues
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDEERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDWGLFAGGFVPALVFGVAFGNLLQGVPFKFDSDLRVTYYGGF
WALLNPFALLCGLVSLTMLVAHGAAFIKMKTDGVIARRASIALRVASFLAVVLFVLAGVLVASYIGGFHITHAAPTDTVA
NPLLKDVAAGSGLWLANYGDYPWMIAAPVVGIAGGVLALLLAGSKQEKTAFFCTGLMITGVILTAGFSMFPFIMPSSLDP
RSSLTVWDSTSSHMTLQVMLFAVIVFLPIVLLYTSWVYRVMRGKVTHQTLEENTHSMY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=378, Percent_Identity=53.7037037037037, Blast_Score=411, Evalue=1e-116,
Organism=Escherichia coli, GI1787213, Length=377, Percent_Identity=52.5198938992042, Blast_Score=389, Evalue=1e-109,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41226; Mature: 41226

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDEERRIIVNTVGATWEGNQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCE
VWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDW
EEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
GLFAGGFVPALVFGVAFGNLLQGVPFKFDSDLRVTYYGGFWALLNPFALLCGLVSLTMLV
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
AHGAAFIKMKTDGVIARRASIALRVASFLAVVLFVLAGVLVASYIGGFHITHAAPTDTVA
HCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHH
NPLLKDVAAGSGLWLANYGDYPWMIAAPVVGIAGGVLALLLAGSKQEKTAFFCTGLMITG
HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VILTAGFSMFPFIMPSSLDPRSSLTVWDSTSSHMTLQVMLFAVIVFLPIVLLYTSWVYRV
HHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRGKVTHQTLEENTHSMY
HHCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDEERRIIVNTVGATWEGNQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCE
VWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDW
EEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
GLFAGGFVPALVFGVAFGNLLQGVPFKFDSDLRVTYYGGFWALLNPFALLCGLVSLTMLV
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
AHGAAFIKMKTDGVIARRASIALRVASFLAVVLFVLAGVLVASYIGGFHITHAAPTDTVA
HCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHH
NPLLKDVAAGSGLWLANYGDYPWMIAAPVVGIAGGVLALLLAGSKQEKTAFFCTGLMITG
HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VILTAGFSMFPFIMPSSLDPRSSLTVWDSTSSHMTLQVMLFAVIVFLPIVLLYTSWVYRV
HHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRGKVTHQTLEENTHSMY
HHCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]