| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690705
Identifier: 116690705
GI number: 116690705
Start: 2974860
End: 2975684
Strand: Direct
Name: 116690705
Synonym: Bcen2424_2685
Alternate gene names: NA
Gene position: 2974860-2975684 (Clockwise)
Preceding gene: 116690704
Following gene: 116690706
Centisome position: 85.39
GC content: 69.7
Gene sequence:
>825_bases ATGCAAACCTTCCACTTTTCGCTGAACCGGATGAGCGCGCCGCGCTTGCCGCTCGACCGCTACGTCGCGCTGTGCCGGCG CCTTGGCGTCGACACGATCGAAATCCGCAACGATCTCGACGGCGTCGAGCTCGCCGACGGCACGCCCGCGGCCGCGGTCC GCGCGGCGACCGAAGGCGGCGGCGTGACGATCCTGACGATCAACGCGCTGCAGCGCTTCGAGCAATGGAACGCCGAGCGT GCGGACGAGGCGACCGTGCTGGCCGACTATGCGGCGCAATGCGGCGCGCGTGCGCTGGTGCTGTGCCCGACCAACAGCCA CGGCGACACGCGCAGCGCGGACGCCCGCCATGCGGATCTCGTCACGGCGCTGAAGGCGCTGAAACCGATCCTTGAAGCCC GCGGCCTGCTCGGCTTCATCGAACCGCTCGGCTTCGAGGAATGCGCGCTGCGCCGCAAGTCGGACGCGGTGAAGGGCATC TACGCGGCGGCGGGCGAGCCGGTGTTCCGGCTCGTGCACGACACGTTCCATCATCACCTCGCCGGCGAGGACATCTTCTT CCCGAACCTGACGGGCCTCGTGCACATCTCGGGCGTCGAGGACGCCGACCTGCCGGTCGACCGGATGCGCGACGGCCACC GCGTGCTGGTCGGCGGCGCCGATCGGCTCGGCAACGTCCGGCAACTGCGCGAGCTGCTCGCGCGCGGCTACCGCGGCGCG TTGTCGTTCGAGCCGTTCGCGAGCGAAATCGCAGAAGCGGACGACATCGAAGACCGGCTGCGGGCGAGCATCGATTACGT GCGCGGCGAACTGGCCGATCGCTGA
Upstream 100 bases:
>100_bases GCGTGCGCGCACTGGCTGCGCGACACGTGGCACGCACTTGCCGCGCGCACCGGCACCTGATTCGGACCCGCCCCACTCCA GCCTCAAGGACAGAACGACG
Downstream 100 bases:
>100_bases GCGGACCACCGTGACGGTGCGCGACCCACGCCGGTCGCGCACCGGCAAGACGAGAAAATCCACAGGAGAACGGAATGATC GAATTCGCTTTGTTCGGCGC
Product: xylose isomerase domain-containing protein
Products: NA
Alternate protein names: Xylose Isomerase Domain Protein TIM Barrel; IolI Protein; Cytoplasmic Protein; Myo-Inositol Catabolism Protein; Sugar Epimerase; Sugar Epimerase Protein; Xylose Isomerase-Like TIM Barrel; Protein IolI; Protein Implicated IN Myo-Inositol Catabolique Pathway; Protein Implicated In Myo-Inositol Catabolique Pathway; IolL Protein; Myo-Inositol Catabolism Protein IolI
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MQTFHFSLNRMSAPRLPLDRYVALCRRLGVDTIEIRNDLDGVELADGTPAAAVRAATEGGGVTILTINALQRFEQWNAER ADEATVLADYAAQCGARALVLCPTNSHGDTRSADARHADLVTALKALKPILEARGLLGFIEPLGFEECALRRKSDAVKGI YAAAGEPVFRLVHDTFHHHLAGEDIFFPNLTGLVHISGVEDADLPVDRMRDGHRVLVGGADRLGNVRQLRELLARGYRGA LSFEPFASEIAEADDIEDRLRASIDYVRGELADR
Sequences:
>Translated_274_residues MQTFHFSLNRMSAPRLPLDRYVALCRRLGVDTIEIRNDLDGVELADGTPAAAVRAATEGGGVTILTINALQRFEQWNAER ADEATVLADYAAQCGARALVLCPTNSHGDTRSADARHADLVTALKALKPILEARGLLGFIEPLGFEECALRRKSDAVKGI YAAAGEPVFRLVHDTFHHHLAGEDIFFPNLTGLVHISGVEDADLPVDRMRDGHRVLVGGADRLGNVRQLRELLARGYRGA LSFEPFASEIAEADDIEDRLRASIDYVRGELADR >Mature_274_residues MQTFHFSLNRMSAPRLPLDRYVALCRRLGVDTIEIRNDLDGVELADGTPAAAVRAATEGGGVTILTINALQRFEQWNAER ADEATVLADYAAQCGARALVLCPTNSHGDTRSADARHADLVTALKALKPILEARGLLGFIEPLGFEECALRRKSDAVKGI YAAAGEPVFRLVHDTFHHHLAGEDIFFPNLTGLVHISGVEDADLPVDRMRDGHRVLVGGADRLGNVRQLRELLARGYRGA LSFEPFASEIAEADDIEDRLRASIDYVRGELADR
Specific function: Unknown
COG id: COG4130
COG function: function code G; Predicted sugar epimerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29963; Mature: 29963
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTFHFSLNRMSAPRLPLDRYVALCRRLGVDTIEIRNDLDGVELADGTPAAAVRAATEGG CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCEECCCCCHHHHEEECCCC GVTILTINALQRFEQWNAERADEATVLADYAAQCGARALVLCPTNSHGDTRSADARHADL CEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHH VTALKALKPILEARGLLGFIEPLGFEECALRRKSDAVKGIYAAAGEPVFRLVHDTFHHHL HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH AGEDIFFPNLTGLVHISGVEDADLPVDRMRDGHRVLVGGADRLGNVRQLRELLARGYRGA CCCCEECCCCCCEEEECCCCCCCCCHHHHCCCCEEEEECCHHCCCHHHHHHHHHHCCCCC LSFEPFASEIAEADDIEDRLRASIDYVRGELADR CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MQTFHFSLNRMSAPRLPLDRYVALCRRLGVDTIEIRNDLDGVELADGTPAAAVRAATEGG CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCEECCCCCHHHHEEECCCC GVTILTINALQRFEQWNAERADEATVLADYAAQCGARALVLCPTNSHGDTRSADARHADL CEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHH VTALKALKPILEARGLLGFIEPLGFEECALRRKSDAVKGIYAAAGEPVFRLVHDTFHHHL HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH AGEDIFFPNLTGLVHISGVEDADLPVDRMRDGHRVLVGGADRLGNVRQLRELLARGYRGA CCCCEECCCCCCEEEECCCCCCCCCHHHHCCCCEEEEECCHHCCCHHHHHHHHHHCCCCC LSFEPFASEIAEADDIEDRLRASIDYVRGELADR CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA