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The map label for this gene is glpF [H]

Identifier: 116690699

GI number: 116690699

Start: 2968976

End: 2969692

Strand: Direct

Name: glpF [H]

Synonym: Bcen2424_2679

Alternate gene names: 116690699

Gene position: 2968976-2969692 (Clockwise)

Preceding gene: 116690698

Following gene: 116690703

Centisome position: 85.22

GC content: 67.78

Gene sequence:

>717_bases
ATGTCACCTTATATTGCAGAATTCATCGGCACGGCGATCCTCGTGCTGCTCGGCAACGGCGCGGTCGCAAACGTGCTGCT
TGCAAAGACCAAGGGCAAAGGCGCGGACCTGATCGTGATCGTGATGGGCTGGGCGATGGCGGTATTCGTCGCGGTCTACG
TGACCGCGTCGTTCAGCGGCGCGCACCTGAACCCGATCGTCACGATCAGCCTCGCGCTCGCGGGCAAGTTCGCGTGGTCG
AAAGTCGGCGGCTACGTGCTCGCGCAGATGCTCGGCGGGATGGCGGGCGCGCTGCTCGTGTGGCTCGCGTATCGCCAGCA
CTTCGCGAAGGAAGCCGATGCCGACCTGAAGCTCGCGGTGTTCTGCACGGCGCCGGCGATCCGCAGCACCACGCACAACG
TGCTGACCGAAGCGATCTGCACGTTCGTGCTGATCCTCGGCGTCCTGTATCTCGCGTCGCCGCAAGTCGGCCTCGGCGCA
CTCGACGCGCTGCCCGTCGGCCTGCTGGTGCTCGGCATCGGCATCTCGCTCGGCGGCCCGACCGGCTATGCGATGAGCCC
CGCACGCGACCTGTCGCCGCGCATCATGCATGCGCTGCTGCCGATTCCCGGCAAGCGCGACAGCGACTGGCGCTATGCGT
GGGTGCCCGTCGTCGGCCCGCTGCTCGGCGGCGCGGCGGCAGCCGGCCTGTATCTGCGCCTGCACGCGATGGCCTGA

Upstream 100 bases:

>100_bases
GGGCCGACGACACCCAGTAATCCGAATAAAACCAAACGAAATACAACAACACCGGCGGACCGCGCGATGCGCGAGTCCGC
CGTGACTTCGAGAGACAATC

Downstream 100 bases:

>100_bases
TCGCGGTTTGAACGAAGCGCGCGGCGTTCGCTGCCGCGCGCTTTACTCCCCTCCTTTCTTCTGCCGGTCATTCACGGCCG
TCACCAGCGATTTCAGCTTC

Product: MIP family channel protein

Products: glycerol [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MSPYIAEFIGTAILVLLGNGAVANVLLAKTKGKGADLIVIVMGWAMAVFVAVYVTASFSGAHLNPIVTISLALAGKFAWS
KVGGYVLAQMLGGMAGALLVWLAYRQHFAKEADADLKLAVFCTAPAIRSTTHNVLTEAICTFVLILGVLYLASPQVGLGA
LDALPVGLLVLGIGISLGGPTGYAMSPARDLSPRIMHALLPIPGKRDSDWRYAWVPVVGPLLGGAAAAGLYLRLHAMA

Sequences:

>Translated_238_residues
MSPYIAEFIGTAILVLLGNGAVANVLLAKTKGKGADLIVIVMGWAMAVFVAVYVTASFSGAHLNPIVTISLALAGKFAWS
KVGGYVLAQMLGGMAGALLVWLAYRQHFAKEADADLKLAVFCTAPAIRSTTHNVLTEAICTFVLILGVLYLASPQVGLGA
LDALPVGLLVLGIGISLGGPTGYAMSPARDLSPRIMHALLPIPGKRDSDWRYAWVPVVGPLLGGAAAAGLYLRLHAMA
>Mature_237_residues
SPYIAEFIGTAILVLLGNGAVANVLLAKTKGKGADLIVIVMGWAMAVFVAVYVTASFSGAHLNPIVTISLALAGKFAWSK
VGGYVLAQMLGGMAGALLVWLAYRQHFAKEADADLKLAVFCTAPAIRSTTHNVLTEAICTFVLILGVLYLASPQVGLGAL
DALPVGLLVLGIGISLGGPTGYAMSPARDLSPRIMHALLPIPGKRDSDWRYAWVPVVGPLLGGAAAAGLYLRLHAMA

Specific function: Glycerol enters the cell via the glycerol diffusion facilitator protein. This membrane protein facilitates the movement of glycerol across the cytoplasmic membrane [H]

COG id: COG0580

COG function: function code G; Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MIP/aquaporin (TC 1.A.8) family [H]

Homologues:

Organism=Homo sapiens, GI157266307, Length=242, Percent_Identity=34.7107438016529, Blast_Score=122, Evalue=3e-28,
Organism=Homo sapiens, GI4826645, Length=238, Percent_Identity=34.8739495798319, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI22538420, Length=247, Percent_Identity=31.5789473684211, Blast_Score=104, Evalue=9e-23,
Organism=Homo sapiens, GI4502187, Length=241, Percent_Identity=31.9502074688797, Blast_Score=97, Evalue=1e-20,
Organism=Escherichia coli, GI1790362, Length=248, Percent_Identity=34.2741935483871, Blast_Score=98, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI71994009, Length=228, Percent_Identity=31.5789473684211, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17544068, Length=241, Percent_Identity=30.2904564315353, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17558372, Length=243, Percent_Identity=30.8641975308642, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17531429, Length=240, Percent_Identity=26.6666666666667, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17531431, Length=240, Percent_Identity=26.6666666666667, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71992966, Length=251, Percent_Identity=28.6852589641434, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI71993722, Length=230, Percent_Identity=30, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6321054, Length=211, Percent_Identity=32.2274881516588, Blast_Score=94, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6322985, Length=271, Percent_Identity=27.6752767527675, Blast_Score=81, Evalue=2e-16,
Organism=Drosophila melanogaster, GI19922828, Length=231, Percent_Identity=30.3030303030303, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24762342, Length=236, Percent_Identity=26.6949152542373, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012269
- InterPro:   IPR000425
- InterPro:   IPR022357 [H]

Pfam domain/function: PF00230 MIP [H]

EC number: NA

Molecular weight: Translated: 24693; Mature: 24562

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPYIAEFIGTAILVLLGNGAVANVLLAKTKGKGADLIVIVMGWAMAVFVAVYVTASFSG
CCCHHHHHHHHHHHHHHCCCHHHHHEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCC
AHLNPIVTISLALAGKFAWSKVGGYVLAQMLGGMAGALLVWLAYRQHFAKEADADLKLAV
CCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
FCTAPAIRSTTHNVLTEAICTFVLILGVLYLASPQVGLGALDALPVGLLVLGIGISLGGP
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
TGYAMSPARDLSPRIMHALLPIPGKRDSDWRYAWVPVVGPLLGGAAAAGLYLRLHAMA
CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHEEEECC
>Mature Secondary Structure 
SPYIAEFIGTAILVLLGNGAVANVLLAKTKGKGADLIVIVMGWAMAVFVAVYVTASFSG
CCHHHHHHHHHHHHHHCCCHHHHHEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCC
AHLNPIVTISLALAGKFAWSKVGGYVLAQMLGGMAGALLVWLAYRQHFAKEADADLKLAV
CCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
FCTAPAIRSTTHNVLTEAICTFVLILGVLYLASPQVGLGALDALPVGLLVLGIGISLGGP
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
TGYAMSPARDLSPRIMHALLPIPGKRDSDWRYAWVPVVGPLLGGAAAAGLYLRLHAMA
CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: glycerol [Periplasm] [C]

Specific reaction: glycerol [Periplasm] = glycerol [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]