Click here to switch to the map view.

The map label for this gene is ybaK [H]

Identifier: 116690577

GI number: 116690577

Start: 2832396

End: 2832887

Strand: Reverse

Name: ybaK [H]

Synonym: Bcen2424_2557

Alternate gene names: 116690577

Gene position: 2832887-2832396 (Counterclockwise)

Preceding gene: 116690579

Following gene: 116690576

Centisome position: 81.31

GC content: 67.28

Gene sequence:

>492_bases
ATGAGCAAATCCAGACACGTGTCCGAAACCCCTGCGACCCAGCTGCTGCGCCGTCATGGCGTCGCATTCGGCGAGCATCC
GTACGAATACGTCGAGCACGGCGGCACCGGCGAATCGGCGCGCCAGCTCGGCGTCGACGAGCACAGCGTCGTGAAGACGC
TCGTGATGGAAGACGAGCACGCGAAGCCGCTGATCGTGCTGATGCACGGCGACCGCACCGTGTCGACGAAGAATCTCGCG
CGGCAGATCGGCGCGAAGCGTGTCGAGCCGTGCAAGCCCGAGGTCGCGAACCGCCATTCGGGCTATCTCGTCGGCGGCAC
GTCGCCGTTCGGCACGCGCAAGACGATGCCCGTCTACGTCGAGTCGACGATCCTCGAATTGCCGACGATCTACCTGAACG
GCGGCCGGCGCGGCTACCTCGTCAGCCTCGCGCCGGCGGTGCTCACGTCGCTGCTCGGCGCGCAGCCGGTGCAGTGCGCG
AGCGTCGACTGA

Upstream 100 bases:

>100_bases
ACGGCGACGCGGTGGGCCGGCGGAAAACGGGCCGCGAGTATACCGTCGGCGCGGGCTCGCCACTGCGCGCCCGGCGATCG
TTCGCCATTAAAATGCCGCC

Downstream 100 bases:

>100_bases
GGGTTTCACCTTCGTGGCACCCCGCGCCCGTTCGGTAGAATGGGCGCCGTTTCGGCCTGCCGGCTTGCCGCGCCCGGCCG
TTCCTTTCCCGATACGTTGA

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MSKSRHVSETPATQLLRRHGVAFGEHPYEYVEHGGTGESARQLGVDEHSVVKTLVMEDEHAKPLIVLMHGDRTVSTKNLA
RQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTRKTMPVYVESTILELPTIYLNGGRRGYLVSLAPAVLTSLLGAQPVQCA
SVD

Sequences:

>Translated_163_residues
MSKSRHVSETPATQLLRRHGVAFGEHPYEYVEHGGTGESARQLGVDEHSVVKTLVMEDEHAKPLIVLMHGDRTVSTKNLA
RQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTRKTMPVYVESTILELPTIYLNGGRRGYLVSLAPAVLTSLLGAQPVQCA
SVD
>Mature_162_residues
SKSRHVSETPATQLLRRHGVAFGEHPYEYVEHGGTGESARQLGVDEHSVVKTLVMEDEHAKPLIVLMHGDRTVSTKNLAR
QIGAKRVEPCKPEVANRHSGYLVGGTSPFGTRKTMPVYVESTILELPTIYLNGGRRGYLVSLAPAVLTSLLGAQPVQCAS
VD

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=160, Percent_Identity=35, Blast_Score=96, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17699; Mature: 17568

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSRHVSETPATQLLRRHGVAFGEHPYEYVEHGGTGESARQLGVDEHSVVKTLVMEDEH
CCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCCC
AKPLIVLMHGDRTVSTKNLARQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTRKTMPVYV
CCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEE
ESTILELPTIYLNGGRRGYLVSLAPAVLTSLLGAQPVQCASVD
HHHHHHCCEEEECCCCCEEEEEHHHHHHHHHHCCCCCEECCCC
>Mature Secondary Structure 
SKSRHVSETPATQLLRRHGVAFGEHPYEYVEHGGTGESARQLGVDEHSVVKTLVMEDEH
CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCCC
AKPLIVLMHGDRTVSTKNLARQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTRKTMPVYV
CCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEE
ESTILELPTIYLNGGRRGYLVSLAPAVLTSLLGAQPVQCASVD
HHHHHHCCEEEECCCCCEEEEEHHHHHHHHHHCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]