| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690562
Identifier: 116690562
GI number: 116690562
Start: 2817919
End: 2819130
Strand: Direct
Name: 116690562
Synonym: Bcen2424_2542
Alternate gene names: NA
Gene position: 2817919-2819130 (Clockwise)
Preceding gene: 116690561
Following gene: 116690565
Centisome position: 80.88
GC content: 73.27
Gene sequence:
>1212_bases TTGAACACGTCGACCCTCCCCGCCCCCGCCCGTCATCCGTGGCCCGTCTTCATCGCGTTCCTGCGGCTCGGGCTCACGTC GTTCGGCGGGCCGGTCGCGCATCTCGGCTACTTTCGCGCGGAATTCGTCACGCGGCGCGGCTGGCTCACCGAGCGCACCT ATGCCGATCTGGTCGGGCTGTGCCAGTTCCTGCCGGGGCCGGCGAGCAGCCAGGTCGGGATGGCGATCGGTCTCGCGCGC GCCGGCTATGCCGGCATGTTCGCCGCGTGGCTCGGTTTCACGCTGCCGTCGGCGCTGCTGATGATGCTGTTCGCGCTCGG CGTTCACGCGACGGGCGCGCCGATCGAAGCCGGCGCGCTGCACGGGCTGCGCATCGTGTCGGTCGCGGTGATCGCGCAAG CCGTATGGGGCATGGCGCGCACGCTGTGCCCGGACGCGCGGCGCGTCACGCTGATGGCCGCGGCCGCCTGCGTCGCGCTG CTCGCACCGGCCGCCTGGACGCAGGTCGCGGTGATCGTCGTGGCCGGCGCGGCCGGTGTCGTGCTGCTGCCGCAACCGGC GCGCGACGCGCACGAACCGTTGCCGCTGCACGTGTCGTCCCGCGCGGGCGTGCTGTGGCTTCTGCTGTTCGCGGCGCTGC TCGTCGCGCTGCCGTTCGCGGCCCGCGTGCTGCGCTCCGATACGCTCGCCGTCGTCGATGCGTTCTTCCGCACGGGTGCG CTCGTGTTCGGCGGCGGGCACGTGGTGCTGCCGCTGCTGCAGGCGGCCGTGGTCGCGCCCGGCTGGGTCGGCGATTCGGC GTTTCTCGCCGGATATGGCGTCGCGCAGGCCGTGCCGGGGCCGCTGTTCACGTTCTCGGCATTCCTCGGTGCGTCGCTGC GCGATGCGCCGAACGGCTGGCTCGGCGGCACGATCGCACTCGTGTCGATCTTCGCGCCGTCGTTCCTGCTCATCGGAGGC ACCGCGCCGTTCTGGGAACGCCTGCGCCGCAGCGCGCACATGCAGGCCGCGCTCGCCGGCGTGAACGCGGCCGTCGTCGG GCTGCTGCTCGCCGCGCTCTATCACCCGGTCTGGACCGATACGATCGTCGCGCCGCGCGACCTGGCCGCCGCGCTGGTCG CCTTCGTCGCGCTGGTGTTCTGGCGCGTGCCGCCATGGGCCGTCGTGATCGCGAGCGCGGCGCTCGGCTGGCTGCTCGGC ATCGCCGGCTGA
Upstream 100 bases:
>100_bases CGCAACGGCCTCGGCAGGCCTTTGTCGACGCTGCGCGCTGCCCCGCAGCCGCCGAGTTGCGCTATCGTGGCGACTCGTTC CGCCAGCCGCGCGCACCGCC
Downstream 100 bases:
>100_bases TCCGGCGGGCGCGGCACGTTCGGGCCGCGCAAAAACAAAAAGCCCTCGAAACGAGGGCTTTTTTCGATGCTGCGCGCCGT GGCGGCGCGCAGGCACCGGA
Product: chromate transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 403; Mature: 403
Protein sequence:
>403_residues MNTSTLPAPARHPWPVFIAFLRLGLTSFGGPVAHLGYFRAEFVTRRGWLTERTYADLVGLCQFLPGPASSQVGMAIGLAR AGYAGMFAAWLGFTLPSALLMMLFALGVHATGAPIEAGALHGLRIVSVAVIAQAVWGMARTLCPDARRVTLMAAAACVAL LAPAAWTQVAVIVVAGAAGVVLLPQPARDAHEPLPLHVSSRAGVLWLLLFAALLVALPFAARVLRSDTLAVVDAFFRTGA LVFGGGHVVLPLLQAAVVAPGWVGDSAFLAGYGVAQAVPGPLFTFSAFLGASLRDAPNGWLGGTIALVSIFAPSFLLIGG TAPFWERLRRSAHMQAALAGVNAAVVGLLLAALYHPVWTDTIVAPRDLAAALVAFVALVFWRVPPWAVVIASAALGWLLG IAG
Sequences:
>Translated_403_residues MNTSTLPAPARHPWPVFIAFLRLGLTSFGGPVAHLGYFRAEFVTRRGWLTERTYADLVGLCQFLPGPASSQVGMAIGLAR AGYAGMFAAWLGFTLPSALLMMLFALGVHATGAPIEAGALHGLRIVSVAVIAQAVWGMARTLCPDARRVTLMAAAACVAL LAPAAWTQVAVIVVAGAAGVVLLPQPARDAHEPLPLHVSSRAGVLWLLLFAALLVALPFAARVLRSDTLAVVDAFFRTGA LVFGGGHVVLPLLQAAVVAPGWVGDSAFLAGYGVAQAVPGPLFTFSAFLGASLRDAPNGWLGGTIALVSIFAPSFLLIGG TAPFWERLRRSAHMQAALAGVNAAVVGLLLAALYHPVWTDTIVAPRDLAAALVAFVALVFWRVPPWAVVIASAALGWLLG IAG >Mature_403_residues MNTSTLPAPARHPWPVFIAFLRLGLTSFGGPVAHLGYFRAEFVTRRGWLTERTYADLVGLCQFLPGPASSQVGMAIGLAR AGYAGMFAAWLGFTLPSALLMMLFALGVHATGAPIEAGALHGLRIVSVAVIAQAVWGMARTLCPDARRVTLMAAAACVAL LAPAAWTQVAVIVVAGAAGVVLLPQPARDAHEPLPLHVSSRAGVLWLLLFAALLVALPFAARVLRSDTLAVVDAFFRTGA LVFGGGHVVLPLLQAAVVAPGWVGDSAFLAGYGVAQAVPGPLFTFSAFLGASLRDAPNGWLGGTIALVSIFAPSFLLIGG TAPFWERLRRSAHMQAALAGVNAAVVGLLLAALYHPVWTDTIVAPRDLAAALVAFVALVFWRVPPWAVVIASAALGWLLG IAG
Specific function: Unknown
COG id: COG2059
COG function: function code P; Chromate transport protein ChrA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chromate ion transporter (CHR) (TC 2.A.51) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003370 - InterPro: IPR014047 [H]
Pfam domain/function: PF02417 Chromate_transp [H]
EC number: NA
Molecular weight: Translated: 41847; Mature: 41847
Theoretical pI: Translated: 10.59; Mature: 10.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTSTLPAPARHPWPVFIAFLRLGLTSFGGPVAHLGYFRAEFVTRRGWLTERTYADLVGL CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH CQFLPGPASSQVGMAIGLARAGYAGMFAAWLGFTLPSALLMMLFALGVHATGAPIEAGAL HHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH HGLRIVSVAVIAQAVWGMARTLCPDARRVTLMAAAACVALLAPAAWTQVAVIVVAGAAGV HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCE VLLPQPARDAHEPLPLHVSSRAGVLWLLLFAALLVALPFAARVLRSDTLAVVDAFFRTGA EECCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LVFGGGHVVLPLLQAAVVAPGWVGDSAFLAGYGVAQAVPGPLFTFSAFLGASLRDAPNGW EEEECCHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHCCCHHHHHHHHHCCCCCCCCCCC LGGTIALVSIFAPSFLLIGGTAPFWERLRRSAHMQAALAGVNAAVVGLLLAALYHPVWTD CHHHHHHHHHHHCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC TIVAPRDLAAALVAFVALVFWRVPPWAVVIASAALGWLLGIAG CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNTSTLPAPARHPWPVFIAFLRLGLTSFGGPVAHLGYFRAEFVTRRGWLTERTYADLVGL CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH CQFLPGPASSQVGMAIGLARAGYAGMFAAWLGFTLPSALLMMLFALGVHATGAPIEAGAL HHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH HGLRIVSVAVIAQAVWGMARTLCPDARRVTLMAAAACVALLAPAAWTQVAVIVVAGAAGV HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCE VLLPQPARDAHEPLPLHVSSRAGVLWLLLFAALLVALPFAARVLRSDTLAVVDAFFRTGA EECCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LVFGGGHVVLPLLQAAVVAPGWVGDSAFLAGYGVAQAVPGPLFTFSAFLGASLRDAPNGW EEEECCHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHCCCHHHHHHHHHCCCCCCCCCCC LGGTIALVSIFAPSFLLIGGTAPFWERLRRSAHMQAALAGVNAAVVGLLLAALYHPVWTD CHHHHHHHHHHHCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC TIVAPRDLAAALVAFVALVFWRVPPWAVVIASAALGWLLGIAG CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]