| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690547
Identifier: 116690547
GI number: 116690547
Start: 2800890
End: 2801390
Strand: Direct
Name: 116690547
Synonym: Bcen2424_2527
Alternate gene names: NA
Gene position: 2800890-2801390 (Clockwise)
Preceding gene: 116690546
Following gene: 116690548
Centisome position: 80.4
GC content: 66.87
Gene sequence:
>501_bases GTGTCATTCTCCCTGCGCCCGTCGCTCGGCCGCCTTGCGCGCGCCGCCGTGTTTCCCGCCGCGCTCGCCGTCTTCGCACT CGGCATGCAGGCCGCCAGCGCGCAAGTGCCGCCCGGCGCCAAGCAGCCGAGCGAGTTCCCGCGCGTGAAGCTGCGCGCCG GCATGTACGTGATCGACGCGGCCGTCGCCGCGAACGACGCCGACCGCGAACAGGGGCTGATGTACCGTTCGCAGCTCGCG CCGAACGAAGGCATGCTGTTCGTCTTCAACGAGAACGCCGTGCACTGCTTCTGGATGAAGAACACGCTGATTCCGCTGTC GATCGCGTTCATCCGCGCGGATGGCACGATCACCGACATCGACGAGATGAAGGCCGAGACGACCGACAACCACTGCCCGC GCAACAACGGCGTCTATGCGCTCGAAATGAGCAAGGGCTGGTTCGCCGCGAAGGGCATCAAGCCCGGCATGAAGCTCGAC GGCCTGCCGCGGGCTCAGTAA
Upstream 100 bases:
>100_bases AAGGCAGATCACCGCAAGGCGATCTGCCTTTTTCTTTTTTGTGCCCGCCGGCGCGCATCGCGTACCATGCGGGTCTCGTT TTCCAGACAGGAGCCATGCT
Downstream 100 bases:
>100_bases CCGCAACGGTCCGCGCGGCGGCATCGCGCCGCGCCCCGACCGAACAGCCGGCCGCCCGTCATTTCCTGTCGGGCGCCGGT TTTTTTTCGTCCGCCCGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Signal Peptide Protein; Lipoprotein; Secreted Protein
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MSFSLRPSLGRLARAAVFPAALAVFALGMQAASAQVPPGAKQPSEFPRVKLRAGMYVIDAAVAANDADREQGLMYRSQLA PNEGMLFVFNENAVHCFWMKNTLIPLSIAFIRADGTITDIDEMKAETTDNHCPRNNGVYALEMSKGWFAAKGIKPGMKLD GLPRAQ
Sequences:
>Translated_166_residues MSFSLRPSLGRLARAAVFPAALAVFALGMQAASAQVPPGAKQPSEFPRVKLRAGMYVIDAAVAANDADREQGLMYRSQLA PNEGMLFVFNENAVHCFWMKNTLIPLSIAFIRADGTITDIDEMKAETTDNHCPRNNGVYALEMSKGWFAAKGIKPGMKLD GLPRAQ >Mature_165_residues SFSLRPSLGRLARAAVFPAALAVFALGMQAASAQVPPGAKQPSEFPRVKLRAGMYVIDAAVAANDADREQGLMYRSQLAP NEGMLFVFNENAVHCFWMKNTLIPLSIAFIRADGTITDIDEMKAETTDNHCPRNNGVYALEMSKGWFAAKGIKPGMKLDG LPRAQ
Specific function: Unknown
COG id: COG1430
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18031; Mature: 17900
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFSLRPSLGRLARAAVFPAALAVFALGMQAASAQVPPGAKQPSEFPRVKLRAGMYVIDA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCEEEEEE AVAANDADREQGLMYRSQLAPNEGMLFVFNENAVHCFWMKNTLIPLSIAFIRADGTITDI EHHCCCCCHHHCCEEHHHCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEECCCCEECH DEMKAETTDNHCPRNNGVYALEMSKGWFAAKGIKPGMKLDGLPRAQ HHHHCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCC >Mature Secondary Structure SFSLRPSLGRLARAAVFPAALAVFALGMQAASAQVPPGAKQPSEFPRVKLRAGMYVIDA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCEEEEEE AVAANDADREQGLMYRSQLAPNEGMLFVFNENAVHCFWMKNTLIPLSIAFIRADGTITDI EHHCCCCCHHHCCEEHHHCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEECCCCEECH DEMKAETTDNHCPRNNGVYALEMSKGWFAAKGIKPGMKLDGLPRAQ HHHHCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA