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The map label for this gene is radC [C]

Identifier: 116690521

GI number: 116690521

Start: 2770393

End: 2771166

Strand: Direct

Name: radC [C]

Synonym: Bcen2424_2501

Alternate gene names: 116690521

Gene position: 2770393-2771166 (Clockwise)

Preceding gene: 116690512

Following gene: 116690522

Centisome position: 79.52

GC content: 69.12

Gene sequence:

>774_bases
ATGCTGTCTCCCTGCCCCATCCTGCCGTCGGCCGAATGCCGCGACACCGCCGATACGCCGGCCGATCCGCCCGGCCGCGT
CATCCCGATCAACCGGCGCAGGCGCCGTCCGGGCGACTGGCGGCCCGAGCGGCCGCGCGAACGGCTGCTGGAACGCGGGC
CGGCCGCGCTGACCGACGACGAGCTGATCGCGCTGCTGCTCGGCACCGGCAAGCCCGGTCACGATGTATTCGTCACCGCC
CGCGCACTGGTCGATCAGTTCGGCACGCTGCACGGGCTGCTCGAAGCGACCGCCGACGATTTCGAGGCGCACCCCGGCAT
CGGCCCCGCACGCTCGGCGCGACTCGTCGCGGTCACCGAGATCGCGCGGCGCATGCTGGTGGAGAAGGCGGAAGAACGGA
TGCAGATCGACTCGCCCGGTGCCGTCGAGGATTGTTTGCGACTGAAGATCGGCACGCGCCAGTACGAAGTGTTCATCGCG
GTCTATCTGGACGCGCGCAACCGCCTGATCGACATGGAGGAAATCGCGCGCGGCTCGCTCACACGCATGGCCGTCTATCC
GCGCGAGATCGTGCGCCGCGCGATGAAACACAACGCCGCGGCGCTGATCGTCGCGCACAACCATCCGTCGGGCGCGGTGC
AGCCGAGCGCGGAAGACCGCCGCCTGACCCGCGTGCTGAAGGACGCGCTCGAACTCGTCGACGTACGGTTGCTCGATCAT
GTCGTCGTCGGCGTCAGCGATACTTTCTCGTTCGCGCGGGCCGGTTGGCTGTAG

Upstream 100 bases:

>100_bases
ATGGCCCGGCGCAAAGCCAATATTGTAAGTCACCTGAGCGTGCAAGGCGGAAAGTGCGACGACGTTGCGCCCGCCGCCCG
CCGCCAATGGAGTTCCGACC

Downstream 100 bases:

>100_bases
ACTGTGGCGCGGCGGCCCATCCCAGGGCGCCGCAACGACGAAGCGAAATTAGGTTTGATTTTTCTGAACTTTTTCTGCTA
GAATCGTCGTCTGTCTTTTT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MLSPCPILPSAECRDTADTPADPPGRVIPINRRRRRPGDWRPERPRERLLERGPAALTDDELIALLLGTGKPGHDVFVTA
RALVDQFGTLHGLLEATADDFEAHPGIGPARSARLVAVTEIARRMLVEKAEERMQIDSPGAVEDCLRLKIGTRQYEVFIA
VYLDARNRLIDMEEIARGSLTRMAVYPREIVRRAMKHNAAALIVAHNHPSGAVQPSAEDRRLTRVLKDALELVDVRLLDH
VVVGVSDTFSFARAGWL

Sequences:

>Translated_257_residues
MLSPCPILPSAECRDTADTPADPPGRVIPINRRRRRPGDWRPERPRERLLERGPAALTDDELIALLLGTGKPGHDVFVTA
RALVDQFGTLHGLLEATADDFEAHPGIGPARSARLVAVTEIARRMLVEKAEERMQIDSPGAVEDCLRLKIGTRQYEVFIA
VYLDARNRLIDMEEIARGSLTRMAVYPREIVRRAMKHNAAALIVAHNHPSGAVQPSAEDRRLTRVLKDALELVDVRLLDH
VVVGVSDTFSFARAGWL
>Mature_257_residues
MLSPCPILPSAECRDTADTPADPPGRVIPINRRRRRPGDWRPERPRERLLERGPAALTDDELIALLLGTGKPGHDVFVTA
RALVDQFGTLHGLLEATADDFEAHPGIGPARSARLVAVTEIARRMLVEKAEERMQIDSPGAVEDCLRLKIGTRQYEVFIA
VYLDARNRLIDMEEIARGSLTRMAVYPREIVRRAMKHNAAALIVAHNHPSGAVQPSAEDRRLTRVLKDALELVDVRLLDH
VVVGVSDTFSFARAGWL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=39.906103286385, Blast_Score=177, Evalue=4e-46,
Organism=Escherichia coli, GI1788997, Length=127, Percent_Identity=44.0944881889764, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI2367100, Length=122, Percent_Identity=45.9016393442623, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788312, Length=143, Percent_Identity=41.2587412587413, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1890_BURCA (Q1BUB2)

Other databases:

- EMBL:   CP000378
- RefSeq:   YP_621766.1
- ProteinModelPortal:   Q1BUB2
- SMR:   Q1BUB2
- STRING:   Q1BUB2
- GeneID:   4093093
- GenomeReviews:   CP000378_GR
- KEGG:   bcn:Bcen_1890
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- ProtClustDB:   PRK00024
- BioCyc:   BCEN331271:BCEN_1890-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 28521; Mature: 28521

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSPCPILPSAECRDTADTPADPPGRVIPINRRRRRPGDWRPERPRERLLERGPAALTDD
CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
ELIALLLGTGKPGHDVFVTARALVDQFGTLHGLLEATADDFEAHPGIGPARSARLVAVTE
CEEEEEEECCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
IARRMLVEKAEERMQIDSPGAVEDCLRLKIGTRQYEVFIAVYLDARNRLIDMEEIARGSL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEEEEEECCCCEECHHHHHCCCH
TRMAVYPREIVRRAMKHNAAALIVAHNHPSGAVQPSAEDRRLTRVLKDALELVDVRLLDH
HHHHHCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVVGVSDTFSFARAGWL
HHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MLSPCPILPSAECRDTADTPADPPGRVIPINRRRRRPGDWRPERPRERLLERGPAALTDD
CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
ELIALLLGTGKPGHDVFVTARALVDQFGTLHGLLEATADDFEAHPGIGPARSARLVAVTE
CEEEEEEECCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
IARRMLVEKAEERMQIDSPGAVEDCLRLKIGTRQYEVFIAVYLDARNRLIDMEEIARGSL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEEEEEECCCCEECHHHHHCCCH
TRMAVYPREIVRRAMKHNAAALIVAHNHPSGAVQPSAEDRRLTRVLKDALELVDVRLLDH
HHHHHCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVVGVSDTFSFARAGWL
HHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA