| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690509
Identifier: 116690509
GI number: 116690509
Start: 2758985
End: 2760022
Strand: Reverse
Name: 116690509
Synonym: Bcen2424_2489
Alternate gene names: NA
Gene position: 2760022-2758985 (Counterclockwise)
Preceding gene: 116690513
Following gene: 116690506
Centisome position: 79.22
GC content: 73.8
Gene sequence:
>1038_bases ATGATCGCGACACGAATCCTGCGCCGGCCGCGCGTACTGATCGTCGGCTGCGGCGACGTCGGCATGCGCTGCGTCGCGCA ATGGCGTAACGCGCGCCCCGACCTGCGTATCCTCGCGCTGACGAGCCATCCGGCTCGCCGCGACGAACTGCGCGCCGCGG GCGCGACGCCGATCGTCGGCGACCTCGATCGCCGGGCGGCGCTCGGCCGTCTCGCGGGCCTCGCCCGCACGATCCTGCAT CTCGCGCCGCCGCCATCCGACGGCCGTGACGACCGGCGCACGCGTGCGCTGATCGCCGCAACGTCCATGCCCGCGCGTCG GCCGGCGGCACCGCCGGCCCCGGCGGTCGGCCGGCTCCGAACGCTGCGCACCGCGGCGCGACAGGCCGGCGCGCCCGTTC GGGCAGCGCGTATTGTACCCGAGGGCCTTCGCGCGCCGACGCTCGTCTATGCCAGTACGACGGGCGTCTACGGCGACTGC GGCGGCGCGCGCATCGACGAAACGCACCCGCTGCGCCCCGCGAATCCGCGCGCGTTCCGGCGCGTGTCGGCCGAGCGGCA ACTGCGTGCGGCGACGGTGCGCGGCGTGCTGTCCGCACGCATCGTGCGCATCCCCGGCATCTACGCGGCGAACCGCCTGC CGGTCGCGCGGCTCGAGCGCGGCACGCCGGCGCTCGAGCCGGCCGACGACGTCTACACGAACCACATCCATGCGGACGAT CTCGCGGCGATCCTGCGCCGGGCGGCCGAGCAGGGCAAGCCGGCGCGCGTCGTGCACGCGTCGGACGACACCGAATGGCG GATGGGAGAGTATTTCGACCGGGTCGCGCAGGTGCTCGGCCTGCCGAAGCCGCCGCGCGTGAGCCGCGCGGACGCCGAGC GCCTGCTCGAGCCGACGCTGCTGTCGTTCATGCGCGAGTCGCGGCGCCTGTCCAACACACGGCTCAAGGCCGAATTGTGC GTGACGTTGCGCTATCCGACCGTAGACGATTTCCTTCAAACGCTCGCGCCGGCCAGCGCGTCAGGTGAGCGCCGGTAA
Upstream 100 bases:
>100_bases AACTAGAACAAAATGGGGGGACCGTGCATGTCGCGCACGGCAGCTACAATGCAAAGCCGTTGCGCGTCGCGCAACGGCGG CTACTGATTTCGCAACCAAC
Downstream 100 bases:
>100_bases CGCCTCGATCAGCAGGAAGCACAGCAGCGCACCGATCAGCGCGCCGATCAGGTTCGGATGATATTTGTGCTTCAGATGCA TCGTGGCCAGCAGGCCTCCG
Product: NAD-dependent epimerase/dehydratase
Products: NA
Alternate protein names: Nucleoside-Diphosphate-Sugar Epimerase; Oxidoreductase Protein; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; Nucleoside-Diphosphate-Sugar Epimerases; NAD Dependent Epimerase/Dehydratase; NAD-Dependent Epimerase/Dehydratase Family Protein; Epimerase; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase Family; Oxidoreductase; Actc Protein; NAD Dependent Epimerase/Dehydratase Family; NAD Dependent Epimerase/Dehydratase Family Protein; Nucleoside-Diphosphate-Sugar Epimerase Protein; Sugar Epimerase/Dehydratase-Like Protein
Number of amino acids: Translated: 345; Mature: 345
Protein sequence:
>345_residues MIATRILRRPRVLIVGCGDVGMRCVAQWRNARPDLRILALTSHPARRDELRAAGATPIVGDLDRRAALGRLAGLARTILH LAPPPSDGRDDRRTRALIAATSMPARRPAAPPAPAVGRLRTLRTAARQAGAPVRAARIVPEGLRAPTLVYASTTGVYGDC GGARIDETHPLRPANPRAFRRVSAERQLRAATVRGVLSARIVRIPGIYAANRLPVARLERGTPALEPADDVYTNHIHADD LAAILRRAAEQGKPARVVHASDDTEWRMGEYFDRVAQVLGLPKPPRVSRADAERLLEPTLLSFMRESRRLSNTRLKAELC VTLRYPTVDDFLQTLAPASASGERR
Sequences:
>Translated_345_residues MIATRILRRPRVLIVGCGDVGMRCVAQWRNARPDLRILALTSHPARRDELRAAGATPIVGDLDRRAALGRLAGLARTILH LAPPPSDGRDDRRTRALIAATSMPARRPAAPPAPAVGRLRTLRTAARQAGAPVRAARIVPEGLRAPTLVYASTTGVYGDC GGARIDETHPLRPANPRAFRRVSAERQLRAATVRGVLSARIVRIPGIYAANRLPVARLERGTPALEPADDVYTNHIHADD LAAILRRAAEQGKPARVVHASDDTEWRMGEYFDRVAQVLGLPKPPRVSRADAERLLEPTLLSFMRESRRLSNTRLKAELC VTLRYPTVDDFLQTLAPASASGERR >Mature_345_residues MIATRILRRPRVLIVGCGDVGMRCVAQWRNARPDLRILALTSHPARRDELRAAGATPIVGDLDRRAALGRLAGLARTILH LAPPPSDGRDDRRTRALIAATSMPARRPAAPPAPAVGRLRTLRTAARQAGAPVRAARIVPEGLRAPTLVYASTTGVYGDC GGARIDETHPLRPANPRAFRRVSAERQLRAATVRGVLSARIVRIPGIYAANRLPVARLERGTPALEPADDVYTNHIHADD LAAILRRAAEQGKPARVVHASDDTEWRMGEYFDRVAQVLGLPKPPRVSRADAERLLEPTLLSFMRESRRLSNTRLKAELC VTLRYPTVDDFLQTLAPASASGERR
Specific function: Unknown
COG id: COG0451
COG function: function code MG; Nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37717; Mature: 37717
Theoretical pI: Translated: 11.90; Mature: 11.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIATRILRRPRVLIVGCGDVGMRCVAQWRNARPDLRILALTSHPARRDELRAAGATPIVG CCCHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHCCCCCCCC DLDRRAALGRLAGLARTILHLAPPPSDGRDDRRTRALIAATSMPARRPAAPPAPAVGRLR CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEECCCCCCCCCCCCCCHHHHHH TLRTAARQAGAPVRAARIVPEGLRAPTLVYASTTGVYGDCGGARIDETHPLRPANPRAFR HHHHHHHHCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHH RVSAERQLRAATVRGVLSARIVRIPGIYAANRLPVARLERGTPALEPADDVYTNHIHADD HHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHCCCCCCCCCCHHHHHCCCCHHH LAAILRRAAEQGKPARVVHASDDTEWRMGEYFDRVAQVLGLPKPPRVSRADAERLLEPTL HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH LSFMRESRRLSNTRLKAELCVTLRYPTVDDFLQTLAPASASGERR HHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MIATRILRRPRVLIVGCGDVGMRCVAQWRNARPDLRILALTSHPARRDELRAAGATPIVG CCCHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHCCCCCCCC DLDRRAALGRLAGLARTILHLAPPPSDGRDDRRTRALIAATSMPARRPAAPPAPAVGRLR CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEECCCCCCCCCCCCCCHHHHHH TLRTAARQAGAPVRAARIVPEGLRAPTLVYASTTGVYGDCGGARIDETHPLRPANPRAFR HHHHHHHHCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHH RVSAERQLRAATVRGVLSARIVRIPGIYAANRLPVARLERGTPALEPADDVYTNHIHADD HHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHCCCCCCCCCCHHHHHCCCCHHH LAAILRRAAEQGKPARVVHASDDTEWRMGEYFDRVAQVLGLPKPPRVSRADAERLLEPTL HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH LSFMRESRRLSNTRLKAELCVTLRYPTVDDFLQTLAPASASGERR HHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA