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The map label for this gene is ycfQ [H]

Identifier: 116690406

GI number: 116690406

Start: 2650034

End: 2650657

Strand: Direct

Name: ycfQ [H]

Synonym: Bcen2424_2386

Alternate gene names: 116690406

Gene position: 2650034-2650657 (Clockwise)

Preceding gene: 116690404

Following gene: 116690408

Centisome position: 76.07

GC content: 67.95

Gene sequence:

>624_bases
ATGGCTGAACGAGGCCGACCGAGAAGCTTCGACAAGGAAGCGGCGCTGGATCGCGCGATGGAGGTGTTCTGGCGTCTCGG
CTACGAAGGGGCGTCGATGACGGACCTGACGGCCGCGATGGGCATCGCGTCGCCGAGCCTGTATGCGGCCTTCGGCAGCA
AGGAAGCGTTGTTCCGGCAAGCGCTCGAGCATTACCGCGCAACCGAGGGACAGGAAATCTGGGGGGGTGTCGAACGGGCG
GCGAGCGCGTACGACGCCGTGCAGAGCTACCTGATGGATACCGCACGCGTGTTCACGCGGCGCTCGAAGCCGGCCGGCTG
CCTGATCGTGCTGTCGGCGCTGCATCCGGCCGAACGTTCGGACATGGTCCGGCAAACGCTGATCGGGATGCGCGAGGGCA
CGGTCGACGCGTTGCGGGAACGCCTCGCGCAAGGCGTCGCGACCGGCGAAATATCCGCGCACGCGAATCTCGATGCGATC
GCCCGCTACTACGTGACGGTTCAGCAGGGCATGTCGATCCAGGCGCGCGACGGCGCGAGCCGCCGCGATCTGGAGGCCAT
TGCGCAGGCCGCGCTGGCCGCTTGGCCGGCGCTCGTCGGTACGAGCAGCGCGGCCAGTGTGTAG

Upstream 100 bases:

>100_bases
CATTTATGTAACGACCAACACAGAATGTGGCAAGTTGCGCCGCACAGTCAATTGATTTATTTTATCGATCGATACAGATA
TCGACGAAGGGACGGACGCA

Downstream 100 bases:

>100_bases
CGGCAGGACGCCGCCGAAAGGAAAGGTTACTGCTTCGCAGCCTGCTGCACGTCCTTCGACGCGTGCCACACGCGATAACG
CACGTCGAAGCCGTCCGGTA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MAERGRPRSFDKEAALDRAMEVFWRLGYEGASMTDLTAAMGIASPSLYAAFGSKEALFRQALEHYRATEGQEIWGGVERA
ASAYDAVQSYLMDTARVFTRRSKPAGCLIVLSALHPAERSDMVRQTLIGMREGTVDALRERLAQGVATGEISAHANLDAI
ARYYVTVQQGMSIQARDGASRRDLEAIAQAALAAWPALVGTSSAASV

Sequences:

>Translated_207_residues
MAERGRPRSFDKEAALDRAMEVFWRLGYEGASMTDLTAAMGIASPSLYAAFGSKEALFRQALEHYRATEGQEIWGGVERA
ASAYDAVQSYLMDTARVFTRRSKPAGCLIVLSALHPAERSDMVRQTLIGMREGTVDALRERLAQGVATGEISAHANLDAI
ARYYVTVQQGMSIQARDGASRRDLEAIAQAALAAWPALVGTSSAASV
>Mature_206_residues
AERGRPRSFDKEAALDRAMEVFWRLGYEGASMTDLTAAMGIASPSLYAAFGSKEALFRQALEHYRATEGQEIWGGVERAA
SAYDAVQSYLMDTARVFTRRSKPAGCLIVLSALHPAERSDMVRQTLIGMREGTVDALRERLAQGVATGEISAHANLDAIA
RYYVTVQQGMSIQARDGASRRDLEAIAQAALAAWPALVGTSSAASV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=198, Percent_Identity=38.8888888888889, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI87082397, Length=187, Percent_Identity=30.4812834224599, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22347; Mature: 22215

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAERGRPRSFDKEAALDRAMEVFWRLGYEGASMTDLTAAMGIASPSLYAAFGSKEALFRQ
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHCCHHHHHHH
ALEHYRATEGQEIWGGVERAASAYDAVQSYLMDTARVFTRRSKPAGCLIVLSALHPAERS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCCHHH
DMVRQTLIGMREGTVDALRERLAQGVATGEISAHANLDAIARYYVTVQQGMSIQARDGAS
HHHHHHHHHHCCCCHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCC
RRDLEAIAQAALAAWPALVGTSSAASV
HHHHHHHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure 
AERGRPRSFDKEAALDRAMEVFWRLGYEGASMTDLTAAMGIASPSLYAAFGSKEALFRQ
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHCCHHHHHHH
ALEHYRATEGQEIWGGVERAASAYDAVQSYLMDTARVFTRRSKPAGCLIVLSALHPAERS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCCHHH
DMVRQTLIGMREGTVDALRERLAQGVATGEISAHANLDAIARYYVTVQQGMSIQARDGAS
HHHHHHHHHHCCCCHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCC
RRDLEAIAQAALAAWPALVGTSSAASV
HHHHHHHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]