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The map label for this gene is fecI [C]

Identifier: 116690403

GI number: 116690403

Start: 2647742

End: 2648323

Strand: Reverse

Name: fecI [C]

Synonym: Bcen2424_2383

Alternate gene names: 116690403

Gene position: 2648323-2647742 (Counterclockwise)

Preceding gene: 116690405

Following gene: 116690402

Centisome position: 76.02

GC content: 59.79

Gene sequence:

>582_bases
ATGGAACCGCCACCCACTTCGCAACCGATGACCGACTCAGACCGCGACATCACTGCGACAGTGATGCGTGAACGAACGAG
GCTAGGGAATTTCATTCGGCGCCGGATTCGCGACCCGGACGATGCCGAGGACGTTCTGCAGGATGTGCTTCACGAATTCG
TACAGGCTTATCGACTGCCTGCGCCGATCGAACAGGCGAGCGCGTGGCTGTTCCGTACCGCGCGCAATCGCATCATCGAT
CGTTTTCGCAAGAAGAAGGAGCAGCCGCTGACCGATCTGCTCGGTGTCGAGGACGAAGCGGACAGCGAGTATCGCCTGGA
TCTTGCGCTACCGTCGCACGATGCCGGCCCTGAAGCGCTCTACGCTCGCACGCTGTTACTCAAGGCGTTGCAGGGTGCGC
TCGACGAATTGCCGGCGAATCAGCGCGAGGTTTTCATCGCGCACGAACTGGAAGGGCTGTCGTTCAAGGAGATGGCCGCG
CAAAGCGGCGTCACCCTCAATACGCTGCTCGCGCGCAAACGCTATGCGGTCCTGCATCTGCGTGCTCGACTGCAACCCAT
TTATGACGAACTGGATAACTAG

Upstream 100 bases:

>100_bases
TGTTCCTTGAAACGACTGCCGCGCAGTGAAGCCGATGCGTACCGCCGCAAATTTTTCACACTCGCCACAATATTCGCGCG
CCTGAAACGTCTTCAGACGC

Downstream 100 bases:

>100_bases
AGGAGTCGACGGATGAATTTTCGAATCAGATGTGCGGGCAAAGCGCTGCTCGTGGTGGTCGCCATCGGCGTGCTCGGATG
GGTCGTCATGATGCTGTGGA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; ECF Family RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Subunit Ecf Family; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor Ecf Subfamily; RNA Polymerase Sigma-30 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-W Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily Protein; RNA Polymerase

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MEPPPTSQPMTDSDRDITATVMRERTRLGNFIRRRIRDPDDAEDVLQDVLHEFVQAYRLPAPIEQASAWLFRTARNRIID
RFRKKKEQPLTDLLGVEDEADSEYRLDLALPSHDAGPEALYARTLLLKALQGALDELPANQREVFIAHELEGLSFKEMAA
QSGVTLNTLLARKRYAVLHLRARLQPIYDELDN

Sequences:

>Translated_193_residues
MEPPPTSQPMTDSDRDITATVMRERTRLGNFIRRRIRDPDDAEDVLQDVLHEFVQAYRLPAPIEQASAWLFRTARNRIID
RFRKKKEQPLTDLLGVEDEADSEYRLDLALPSHDAGPEALYARTLLLKALQGALDELPANQREVFIAHELEGLSFKEMAA
QSGVTLNTLLARKRYAVLHLRARLQPIYDELDN
>Mature_193_residues
MEPPPTSQPMTDSDRDITATVMRERTRLGNFIRRRIRDPDDAEDVLQDVLHEFVQAYRLPAPIEQASAWLFRTARNRIID
RFRKKKEQPLTDLLGVEDEADSEYRLDLALPSHDAGPEALYARTLLLKALQGALDELPANQREVFIAHELEGLSFKEMAA
QSGVTLNTLLARKRYAVLHLRARLQPIYDELDN

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22146; Mature: 22146

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPPPTSQPMTDSDRDITATVMRERTRLGNFIRRRIRDPDDAEDVLQDVLHEFVQAYRLP
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
APIEQASAWLFRTARNRIIDRFRKKKEQPLTDLLGVEDEADSEYRLDLALPSHDAGPEAL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCEEEEEECCCCCCCHHHH
YARTLLLKALQGALDELPANQREVFIAHELEGLSFKEMAAQSGVTLNTLLARKRYAVLHL
HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
RARLQPIYDELDN
HHHHHHHHHHCCC
>Mature Secondary Structure
MEPPPTSQPMTDSDRDITATVMRERTRLGNFIRRRIRDPDDAEDVLQDVLHEFVQAYRLP
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
APIEQASAWLFRTARNRIIDRFRKKKEQPLTDLLGVEDEADSEYRLDLALPSHDAGPEAL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCEEEEEECCCCCCCHHHH
YARTLLLKALQGALDELPANQREVFIAHELEGLSFKEMAAQSGVTLNTLLARKRYAVLHL
HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
RARLQPIYDELDN
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA