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The map label for this gene is ydfD [H]

Identifier: 116690368

GI number: 116690368

Start: 2609509

End: 2610969

Strand: Reverse

Name: ydfD [H]

Synonym: Bcen2424_2348

Alternate gene names: 116690368

Gene position: 2610969-2609509 (Counterclockwise)

Preceding gene: 116690376

Following gene: 116690367

Centisome position: 74.94

GC content: 70.5

Gene sequence:

>1461_bases
ATGTCCACCGTCCCCCTCGCCCAGATTCCCGCGCCGCACGACACGGCCACGCTCACGCTCGTCGACCAGCTGGTCCAGTG
GGCGCGGCGGCGCATCGACGAACGCGTGTTCCGTCCCGGCATGCGCATGCCGTCGATCCGCAAGCTCGCGCTCGACAAGA
GCGTGTCGCGCTTCACCGTCGTCGAGGCCTACGAGCGTCTTGTCGCGCAGGGCTACCTCGACTCGCGGCGCGGCTCCGGC
TTCTACGTGCGCGAGCGCACCGGCGCCGGCCCGCAGCCGGCCGATGGCGTCGCGCGCGTGGCCGAGGCCGCGCCCGTGCA
CAACACGATCGACGTCGTCTGGCTGCTGCGCAACATGCTGCACACGGTCAGCCCGGAGAAGGGCCCGGGCCTCGGCTACC
TGCCGGGCCGCTGGCTCGACGGCGAGCTGATCACCGGCGCGCTGCGCGCGCTCGGGCGCCAGTCGGGCGCGCAGATGCTC
GGCTTCGGCACCGCGCAGGGTTTCCTGCCGCTGCGCCAGCAACTGCAGACGCGCCTCGCCGAAGTCGAGATCGGCGCGAA
GCCCGAACAGATCGTGCTGGTGTCGGGCATCACGCAGGCGATCGACCTGATCTCGCGGATCTACATGCGCCCGGGCGATG
CGGTGATCGTCGGCGATCCGGCGTGGTTCCAGATGTTCGGCCGTTTCGCGGCGCAGGGCGCGCAGCTCGTCGGGATGCCG
TATACGCCCGACGGCCCCGACCTCGACGCGCTCGAAACCCTGGTGCAGATGTGGCGGCCGAAGATGCTCGTGATCAACTC
GGTGCTGCAGAACCCGACCGGCACGTCGCTGTCGGCCGCGCAGGCGTTCCGGATCCTGAAGCTCGCGGAGGCCTACGACT
TCCTCGTCGTCGAGGACGACGTGTACGGCGACCTGTGCCCGCCCAGCTATCCGGCCACGCGCCTCGCGAGCCTCGACCAG
TTGAAGCGCGTGATCTATCTCGGCAGCTATTCGAAGACGCTCGCGGCGAACCTGCGGGTGGGCTACGTGGCTTGCGCGCC
GGAGATCGCGAAGGCGGTCACCGACCAGAAGATGCTGGTCGGGATGACCACGCCCGAGCTCAACGAGCGCGTGCTGTACA
AGATCCTGACCGAAGGGCATTACCGGCGCCACGTCGAGCGGCTGCGCGCGCGGCTCGACGGCGTGCGCGACAAGACCGCG
CGGATGCTCGAGCGCACGGGGCTCGGCCTCTTCACGATGCCGGCGGCCGGGATGTTCCTGTGGGCCGACACGGGCGTCGA
TTCGGACGCGCTCGCGGCGGTCGCGCACGAAGCCGGCTTCCTGCTGACGCCCGGCAGCCTGTTCTCGCCGCAGCAGTCGC
CGTCCACGTGGATGCGCTTCAACGTCGCGAACTGCGGCGATCCGGCGCTGCCGGGGCTGCTGGCGGGCTATATCGACTCG
GCGGTGCGGCGCGCGTCGTGA

Upstream 100 bases:

>100_bases
CGCACGATCGCCATTCCGGTCAACTGTAATCGTCGCTACCGGCACAGTAACGGTACAATCGGCGCGATAGCCTTCGGTAC
AGTTGGAGAGCCTGCCGCCC

Downstream 100 bases:

>100_bases
CGCGGCGCGGCAGGCCGGCTCTTGAAATGGCGCGTGCCGTCCCCAGATACGCGCGCAAACCGCCGGCGCCAGGCGGTCGT
CCCAGAGGGGGCCGTCCCGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 485

Protein sequence:

>486_residues
MSTVPLAQIPAPHDTATLTLVDQLVQWARRRIDERVFRPGMRMPSIRKLALDKSVSRFTVVEAYERLVAQGYLDSRRGSG
FYVRERTGAGPQPADGVARVAEAAPVHNTIDVVWLLRNMLHTVSPEKGPGLGYLPGRWLDGELITGALRALGRQSGAQML
GFGTAQGFLPLRQQLQTRLAEVEIGAKPEQIVLVSGITQAIDLISRIYMRPGDAVIVGDPAWFQMFGRFAAQGAQLVGMP
YTPDGPDLDALETLVQMWRPKMLVINSVLQNPTGTSLSAAQAFRILKLAEAYDFLVVEDDVYGDLCPPSYPATRLASLDQ
LKRVIYLGSYSKTLAANLRVGYVACAPEIAKAVTDQKMLVGMTTPELNERVLYKILTEGHYRRHVERLRARLDGVRDKTA
RMLERTGLGLFTMPAAGMFLWADTGVDSDALAAVAHEAGFLLTPGSLFSPQQSPSTWMRFNVANCGDPALPGLLAGYIDS
AVRRAS

Sequences:

>Translated_486_residues
MSTVPLAQIPAPHDTATLTLVDQLVQWARRRIDERVFRPGMRMPSIRKLALDKSVSRFTVVEAYERLVAQGYLDSRRGSG
FYVRERTGAGPQPADGVARVAEAAPVHNTIDVVWLLRNMLHTVSPEKGPGLGYLPGRWLDGELITGALRALGRQSGAQML
GFGTAQGFLPLRQQLQTRLAEVEIGAKPEQIVLVSGITQAIDLISRIYMRPGDAVIVGDPAWFQMFGRFAAQGAQLVGMP
YTPDGPDLDALETLVQMWRPKMLVINSVLQNPTGTSLSAAQAFRILKLAEAYDFLVVEDDVYGDLCPPSYPATRLASLDQ
LKRVIYLGSYSKTLAANLRVGYVACAPEIAKAVTDQKMLVGMTTPELNERVLYKILTEGHYRRHVERLRARLDGVRDKTA
RMLERTGLGLFTMPAAGMFLWADTGVDSDALAAVAHEAGFLLTPGSLFSPQQSPSTWMRFNVANCGDPALPGLLAGYIDS
AVRRAS
>Mature_485_residues
STVPLAQIPAPHDTATLTLVDQLVQWARRRIDERVFRPGMRMPSIRKLALDKSVSRFTVVEAYERLVAQGYLDSRRGSGF
YVRERTGAGPQPADGVARVAEAAPVHNTIDVVWLLRNMLHTVSPEKGPGLGYLPGRWLDGELITGALRALGRQSGAQMLG
FGTAQGFLPLRQQLQTRLAEVEIGAKPEQIVLVSGITQAIDLISRIYMRPGDAVIVGDPAWFQMFGRFAAQGAQLVGMPY
TPDGPDLDALETLVQMWRPKMLVINSVLQNPTGTSLSAAQAFRILKLAEAYDFLVVEDDVYGDLCPPSYPATRLASLDQL
KRVIYLGSYSKTLAANLRVGYVACAPEIAKAVTDQKMLVGMTTPELNERVLYKILTEGHYRRHVERLRARLDGVRDKTAR
MLERTGLGLFTMPAAGMFLWADTGVDSDALAAVAHEAGFLLTPGSLFSPQQSPSTWMRFNVANCGDPALPGLLAGYIDSA
VRRAS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=312, Percent_Identity=26.6025641025641, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI33469970, Length=312, Percent_Identity=26.6025641025641, Blast_Score=104, Evalue=1e-22,
Organism=Escherichia coli, GI1787710, Length=459, Percent_Identity=27.2331154684096, Blast_Score=135, Evalue=7e-33,
Organism=Escherichia coli, GI1790797, Length=459, Percent_Identity=25.7080610021786, Blast_Score=131, Evalue=1e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53176; Mature: 53045

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVPLAQIPAPHDTATLTLVDQLVQWARRRIDERVFRPGMRMPSIRKLALDKSVSRFTV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHH
VEAYERLVAQGYLDSRRGSGFYVRERTGAGPQPADGVARVAEAAPVHNTIDVVWLLRNML
HHHHHHHHHHCCHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
HTVSPEKGPGLGYLPGRWLDGELITGALRALGRQSGAQMLGFGTAQGFLPLRQQLQTRLA
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHH
EVEIGAKPEQIVLVSGITQAIDLISRIYMRPGDAVIVGDPAWFQMFGRFAAQGAQLVGMP
HHHCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCEEEECC
YTPDGPDLDALETLVQMWRPKMLVINSVLQNPTGTSLSAAQAFRILKLAEAYDFLVVEDD
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCEEEEECC
VYGDLCPPSYPATRLASLDQLKRVIYLGSYSKTLAANLRVGYVACAPEIAKAVTDQKMLV
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCEEEEEECCHHHHHHHCCCHHEE
GMTTPELNERVLYKILTEGHYRRHVERLRARLDGVRDKTARMLERTGLGLFTMPAAGMFL
ECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEECCCCCEEE
WADTGVDSDALAAVAHEAGFLLTPGSLFSPQQSPSTWMRFNVANCGDPALPGLLAGYIDS
EECCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
AVRRAS
HHHHCC
>Mature Secondary Structure 
STVPLAQIPAPHDTATLTLVDQLVQWARRRIDERVFRPGMRMPSIRKLALDKSVSRFTV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHH
VEAYERLVAQGYLDSRRGSGFYVRERTGAGPQPADGVARVAEAAPVHNTIDVVWLLRNML
HHHHHHHHHHCCHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
HTVSPEKGPGLGYLPGRWLDGELITGALRALGRQSGAQMLGFGTAQGFLPLRQQLQTRLA
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHH
EVEIGAKPEQIVLVSGITQAIDLISRIYMRPGDAVIVGDPAWFQMFGRFAAQGAQLVGMP
HHHCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCEEEECC
YTPDGPDLDALETLVQMWRPKMLVINSVLQNPTGTSLSAAQAFRILKLAEAYDFLVVEDD
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCEEEEECC
VYGDLCPPSYPATRLASLDQLKRVIYLGSYSKTLAANLRVGYVACAPEIAKAVTDQKMLV
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCEEEEEECCHHHHHHHCCCHHEE
GMTTPELNERVLYKILTEGHYRRHVERLRARLDGVRDKTARMLERTGLGLFTMPAAGMFL
ECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEECCCCCEEE
WADTGVDSDALAAVAHEAGFLLTPGSLFSPQQSPSTWMRFNVANCGDPALPGLLAGYIDS
EECCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
AVRRAS
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]