| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690344
Identifier: 116690344
GI number: 116690344
Start: 2585806
End: 2587635
Strand: Direct
Name: 116690344
Synonym: Bcen2424_2323
Alternate gene names: NA
Gene position: 2585806-2587635 (Clockwise)
Preceding gene: 116690342
Following gene: 116690345
Centisome position: 74.22
GC content: 69.67
Gene sequence:
>1830_bases ATGCCCGCCCTGATCGAAGACTACGCCCTCGTCGGCGACGGCCACACGGCCGCGCTGATCGCAAAAGACGGCTCCGTCGA CTGGCTGTGCTGGCCCCGCTTCGATTCGGGCGCCTGCTTCGCGGCGCTGCTCGGCACGCCCGAGCACGGCCGCTGGTTGC TTGCTCCGGCCGCCGACGCCGCGATCACGCACACGACCCGCCGCTATCGCGGCGACACGCTGATTCTCGAGACCGATTAC GAAAGCGCCGACGGCGCCGTCACCGTGATCGACTTCATGCCGCCCGGCAACGGCTGGTCCGAACTGGTGCGGATCGTCGT CGGCCGCCACGGCAAGATGAAGATGCGCATGGAACTCGTGTTGCGCTTCGACTACGGTTTCTCGATTCCGTGGGTCACGC AACTGACCCGCGAGGACGGCATGAAGGCCATCGCCGGCCCCGATACCGTCGTGCTGCGCACGCCGGTGCCGCTCACCGGC AAGAACCTCCACACGCTCGCGGAATTCACGGTCGGCGCCGACGAGCGCGTGCCGTTCTCGCTCGGCTACGCGGCGTCGCA CATGCGGCTGCCGCCCGCGCGCGATCCGCTGTCGATGCTCGCGCGCACCGAGAACTACTGGCTCGAATGGTCGGGCCGCT GTCAGGTGCAGGGCCGCTACGCGGCCGCCGTGCGCCGCTCGCTGATCACGCTGAAGGCGCTCGCGTACGAGCCGACCGGC GGCATCGTCGCCGCGCCGACCACGTCGCTGCCGGAGAAGATCGGCGGCAACCGCAACTGGGACTACCGCTACTGCTGGCT GCGCGACGCGACGATCACGCTGCTCGCGCTGATGCGCGGCGGCTACTACGACGAGGCGCGTGCGTGGCGCACGTGGCTCG GCCGCGTGATGGCCGGCTCGCCCGAGCAGATCCAGATCATGTACGGAATCGCCGGCGAGCGCCGGCTGCCGGAAATGGAG CTCGACTGGCTGCCCGGCTACCAGGACTCGCTGCCGGTGCGCGTCGGCAACGGCGCCGCGAACCAGCTCCAGCTCGACGT GTTCGGCGAGGTGATGGCCGCGCTGCACCTTGCGCGCGTGGGCGGCCTGCAGGCCGACGACACGGTCTGGTCCGTGCAGT GCGCGCTGCTCGATCACCTCGAGAAGATCTGGCAGGAACCCGACGAAGGCATCTGGGAAACGCGCGGCGGCCGTCGCCAT TTCACGTTCTCGAAGGTGATGGCGTGGGTCGCGTTCGACCGCGCGATCAAGTCGGCGGAGATGTTCCGGCTGCCCGGCTC GCTCGACCGCTGGCGCGCGCTGCGCGAGCAGATCCATGCGGACGTCTGCGCCAACGCATGGCACGAAGGCAAGCAGGCGT TCGCGCAGAGCTACGGCAGCGACGAGCTCGACGCAAGCGTGCTGCTGCTGCCGCAGCTCGGCTTCCTGCCGCCGGAAGAC CCGCGCATCGTCGGCACGGTCGAGGCGATCGAACGGGAATTGCTGCACGACGGGCTCGTGATGCGCTACCGCACGACCGA ATACGACGACGGCCTGCCGCCGGGCGAAGGCACGTTTCTCGCGTGCAGCTTCTGGCTGGTCGACAGCTATGCGCTGCTCG GCCGGATCGACGACGCGCATCGGCTCTTCAGCCGCCTGCTCGCGCTGTCGAACGACCTCGGGCTGCTCGCGGAGGAATAC GACCCGGTCGCCGGGCGGCTCGTCGGCAACTTCCCGCAGGCGTTCTCGCACGTGGCGCTCGTGCACACCGCGATGAACCT GATGCACCATGAAGACGCGATGGCGCGCGCGGCCGGCCAGCCCGCGCCGGCCGTGGCTACGGGCCGCTGA
Upstream 100 bases:
>100_bases CCGCCGCCCGGCCGAGTATACGGGGCGCGGCGCCCGCGCGTGAAGTCGAGGGCGTCGACGTCCGCATTGTGAAACTCGAA TACCCAAGGATCGCCTGCCC
Downstream 100 bases:
>100_bases ACGGCGCGCGCGGGCCTTGTTCAGAGATCGTCAAATCGCAACACTTTGATGAAAACCCGGGGAAATGTTGCATTGCACCA CCGATCGTTGTCCGATATGA
Product: glycoside hydrolase 15-related
Products: NA
Alternate protein names: Glycosyl Hydrolase; Glycosyl Hydrolase Family; Glycosy Hydrolase Family Protein; Glycoside Hydrolase Family; Trehalose-Phosphatase; Glucoamylase; Glycoside Hydrolase Family Protein; Glucoamylase-Like Glycosyl Hydrolase; Trehalose Phosphatase; Trehalose-Phosphatase/Glycoside Hydrolase; Glycosyl Hydrolase Glucoamylase; Trehalose-Phosphatase/ Glycoside Hydrolase; Glucoamylase Or Related Glycosyl Hydrolase Protein; Glucoamylase Or Related Glycosyl Hydrolase; HAD Family Hydrolase; Six-Hairpin Glycosidase-Like Protein; Hydrolase; Glycosyl Hydrolase Glycosyl Hydrolase Family; Trehalose 6-Phosphatase; Glycosyl Hydrolase Protein; Trehalose-6-Phosphate Phophatase
Number of amino acids: Translated: 609; Mature: 608
Protein sequence:
>609_residues MPALIEDYALVGDGHTAALIAKDGSVDWLCWPRFDSGACFAALLGTPEHGRWLLAPAADAAITHTTRRYRGDTLILETDY ESADGAVTVIDFMPPGNGWSELVRIVVGRHGKMKMRMELVLRFDYGFSIPWVTQLTREDGMKAIAGPDTVVLRTPVPLTG KNLHTLAEFTVGADERVPFSLGYAASHMRLPPARDPLSMLARTENYWLEWSGRCQVQGRYAAAVRRSLITLKALAYEPTG GIVAAPTTSLPEKIGGNRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGSPEQIQIMYGIAGERRLPEME LDWLPGYQDSLPVRVGNGAANQLQLDVFGEVMAALHLARVGGLQADDTVWSVQCALLDHLEKIWQEPDEGIWETRGGRRH FTFSKVMAWVAFDRAIKSAEMFRLPGSLDRWRALREQIHADVCANAWHEGKQAFAQSYGSDELDASVLLLPQLGFLPPED PRIVGTVEAIERELLHDGLVMRYRTTEYDDGLPPGEGTFLACSFWLVDSYALLGRIDDAHRLFSRLLALSNDLGLLAEEY DPVAGRLVGNFPQAFSHVALVHTAMNLMHHEDAMARAAGQPAPAVATGR
Sequences:
>Translated_609_residues MPALIEDYALVGDGHTAALIAKDGSVDWLCWPRFDSGACFAALLGTPEHGRWLLAPAADAAITHTTRRYRGDTLILETDY ESADGAVTVIDFMPPGNGWSELVRIVVGRHGKMKMRMELVLRFDYGFSIPWVTQLTREDGMKAIAGPDTVVLRTPVPLTG KNLHTLAEFTVGADERVPFSLGYAASHMRLPPARDPLSMLARTENYWLEWSGRCQVQGRYAAAVRRSLITLKALAYEPTG GIVAAPTTSLPEKIGGNRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGSPEQIQIMYGIAGERRLPEME LDWLPGYQDSLPVRVGNGAANQLQLDVFGEVMAALHLARVGGLQADDTVWSVQCALLDHLEKIWQEPDEGIWETRGGRRH FTFSKVMAWVAFDRAIKSAEMFRLPGSLDRWRALREQIHADVCANAWHEGKQAFAQSYGSDELDASVLLLPQLGFLPPED PRIVGTVEAIERELLHDGLVMRYRTTEYDDGLPPGEGTFLACSFWLVDSYALLGRIDDAHRLFSRLLALSNDLGLLAEEY DPVAGRLVGNFPQAFSHVALVHTAMNLMHHEDAMARAAGQPAPAVATGR >Mature_608_residues PALIEDYALVGDGHTAALIAKDGSVDWLCWPRFDSGACFAALLGTPEHGRWLLAPAADAAITHTTRRYRGDTLILETDYE SADGAVTVIDFMPPGNGWSELVRIVVGRHGKMKMRMELVLRFDYGFSIPWVTQLTREDGMKAIAGPDTVVLRTPVPLTGK NLHTLAEFTVGADERVPFSLGYAASHMRLPPARDPLSMLARTENYWLEWSGRCQVQGRYAAAVRRSLITLKALAYEPTGG IVAAPTTSLPEKIGGNRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGSPEQIQIMYGIAGERRLPEMEL DWLPGYQDSLPVRVGNGAANQLQLDVFGEVMAALHLARVGGLQADDTVWSVQCALLDHLEKIWQEPDEGIWETRGGRRHF TFSKVMAWVAFDRAIKSAEMFRLPGSLDRWRALREQIHADVCANAWHEGKQAFAQSYGSDELDASVLLLPQLGFLPPEDP RIVGTVEAIERELLHDGLVMRYRTTEYDDGLPPGEGTFLACSFWLVDSYALLGRIDDAHRLFSRLLALSNDLGLLAEEYD PVAGRLVGNFPQAFSHVALVHTAMNLMHHEDAMARAAGQPAPAVATGR
Specific function: Unknown
COG id: COG3387
COG function: function code G; Glucoamylase and related glycosyl hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67627; Mature: 67496
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPALIEDYALVGDGHTAALIAKDGSVDWLCWPRFDSGACFAALLGTPEHGRWLLAPAADA CCCCCCCEEEECCCCEEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCH AITHTTRRYRGDTLILETDYESADGAVTVIDFMPPGNGWSELVRIVVGRHGKMKMRMELV HHHHHHHHHCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEE LRFDYGFSIPWVTQLTREDGMKAIAGPDTVVLRTPVPLTGKNLHTLAEFTVGADERVPFS EEECCCCCCCHHHHHHHHCCCEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEE LGYAASHMRLPPARDPLSMLARTENYWLEWSGRCQVQGRYAAAVRRSLITLKALAYEPTG ECCCHHCCCCCCCCCHHHHHHCCCCEEEEECCEEEECCHHHHHHHHHHHHHHHEEECCCC GIVAAPTTSLPEKIGGNRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGS CEEECCCCCCHHHHCCCCCCCEEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC PEQIQIMYGIAGERRLPEMELDWLPGYQDSLPVRVGNGAANQLQLDVFGEVMAALHLARV CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEHHHHHHHHHHHHHHHH GGLQADDTVWSVQCALLDHLEKIWQEPDEGIWETRGGRRHFTFSKVMAWVAFDRAIKSAE CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH MFRLPGSLDRWRALREQIHADVCANAWHEGKQAFAQSYGSDELDASVLLLPQLGFLPPED HEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC PRIVGTVEAIERELLHDGLVMRYRTTEYDDGLPPGEGTFLACSFWLVDSYALLGRIDDAH CCEEEHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCHHH RLFSRLLALSNDLGLLAEEYDPVAGRLVGNFPQAFSHVALVHTAMNLMHHEDAMARAAGQ HHHHHHHHHCCCCCHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PAPAVATGR CCCCCCCCC >Mature Secondary Structure PALIEDYALVGDGHTAALIAKDGSVDWLCWPRFDSGACFAALLGTPEHGRWLLAPAADA CCCCCCEEEECCCCEEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCH AITHTTRRYRGDTLILETDYESADGAVTVIDFMPPGNGWSELVRIVVGRHGKMKMRMELV HHHHHHHHHCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEE LRFDYGFSIPWVTQLTREDGMKAIAGPDTVVLRTPVPLTGKNLHTLAEFTVGADERVPFS EEECCCCCCCHHHHHHHHCCCEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEE LGYAASHMRLPPARDPLSMLARTENYWLEWSGRCQVQGRYAAAVRRSLITLKALAYEPTG ECCCHHCCCCCCCCCHHHHHHCCCCEEEEECCEEEECCHHHHHHHHHHHHHHHEEECCCC GIVAAPTTSLPEKIGGNRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGS CEEECCCCCCHHHHCCCCCCCEEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC PEQIQIMYGIAGERRLPEMELDWLPGYQDSLPVRVGNGAANQLQLDVFGEVMAALHLARV CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEHHHHHHHHHHHHHHHH GGLQADDTVWSVQCALLDHLEKIWQEPDEGIWETRGGRRHFTFSKVMAWVAFDRAIKSAE CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH MFRLPGSLDRWRALREQIHADVCANAWHEGKQAFAQSYGSDELDASVLLLPQLGFLPPED HEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC PRIVGTVEAIERELLHDGLVMRYRTTEYDDGLPPGEGTFLACSFWLVDSYALLGRIDDAH CCEEEHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCHHH RLFSRLLALSNDLGLLAEEYDPVAGRLVGNFPQAFSHVALVHTAMNLMHHEDAMARAAGQ HHHHHHHHHCCCCCHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PAPAVATGR CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA